Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. - Sergey Nurk; Anton Bankevich; Dmitry Antipov; Alexey A. Gurevich; Anton I. Korobeynikov; Alla L. Lapidus; Andrey D. Prjibelsky; Alex Pyshkin; Alexander Sirotkin 001; Yakov Sirotkin; Ramunas Stepanauskas; Jeffrey S. McLean; et al. (RECOMB, 2013)

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products. - Sergey Nurk; Anton Bankevich; Dmitry Antipov; Alexey A. Gurevich; Anton I. Korobeynikov; Alla L. Lapidus; Andrey D. Prjibelski; Alex Pyshkin; Alexander Sirotkin 001; Yakov Sirotkin; Ramunas Stepanauskas; Scott R. Clingenpeel; et al. (J. Comput. Biol., 2013)

IMG 4 version of the integrated microbial genomes comparative analysis system. - Victor M. Markowitz; I-Min A. Chen; Krishna Palaniappan; Ken Chu; Ernest Szeto; Manoj Pillay; Anna Ratner; Jinghua Huang; Tanja Woyke; Marcel Huntemann; Iain Anderson; Konstantinos Billis; et al. (Nucleic Acids Res., 2014)

MeCorS: Metagenome-enabled error correction of single cell sequencing reads. - Andreas Bremges; Esther Singer; Tanja Woyke; Alexander Sczyrba (Bioinform., 2016)

acdc - Automated Contamination Detection and Confidence estimation for single-cell genome data. - Markus Lux; Jan Krüger; Christian Rinke; Irena Maus; Andreas Schlüter; Tanja Woyke; Alexander Sczyrba; Barbara Hammer (BMC Bioinform., 2016)

IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes. - I-Min A. Chen; Ken Chu; Krishna Palaniappan; Manoj Pillay; Anna Ratner; Jinghua Huang; Marcel Huntemann; Neha Varghese; James R. White; Rekha Seshadri; Tatyana Smirnova; Edward Kirton; et al. (Nucleic Acids Res., 2019)

The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities. - I-Min A. Chen; Ken Chu; Krishnaveni Palaniappan; Anna Ratner; Jinghua Huang; Marcel Huntemann; Patrick Hajek; Stephan Ritter; Neha Varghese; Rekha Seshadri; Simon Roux; Tanja Woyke; et al. (Nucleic Acids Res., 2021)

IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses. - Simon Roux; David Páez-Espino; I-Min A. Chen; Krishna Palaniappan; Anna Ratner; Ken Chu; T. B. K. Reddy; Stephen Nayfach; Frederik Schulz; Lee Call; Russell Y. Neches; Tanja Woyke; et al. (Nucleic Acids Res., 2021)

IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata. - Antonio Pedro Camargo; Stephen Nayfach; I-Min A. Chen; Krishnaveni Palaniappan; Anna Ratner; Ken Chu; Stephan Ritter; T. B. K. Reddy; Supratim Mukherjee; Frederik Schulz; Lee Call; Russell Y. Neches; et al. (Nucleic Acids Res., 2023)

The IMG/M data management and analysis system v.7: content updates and new features. - I-Min A. Chen; Ken Chu; Krishnaveni Palaniappan; Anna Ratner; Jinghua Huang; Marcel Huntemann; Patrick Hajek; Stephan Ritter; Cody Webb; Dongying Wu; Neha Varghese; T. B. K. Reddy; et al. (Nucleic Acids Res., 2023)