A voting mechanism-based linear epitope prediction system for the host-specific Iridoviridae family. - Tao-Chuan Shih; Li-Ping Ho; Jen-Leih Wu; Hsin-Yiu Chou; Tun-Wen Pai (BMC Bioinform., 2019)

Enhanced Functional Pathway Annotations for Differentially Expressed Gene Clusters. - Chun-Cheng Liu; Tao-Chuan Shih; Tun-Wen Pai; Chin-Hwa Hu; Lee-Jyi Wang (ISBRA, 2020)

Enhanced Over-Representation Analysis for the Differential Regulation of Birc5a and HIF2α-Knockdown Approaches. - Chun-Cheng Liu; Tao-Chuan Shih; Tun-Wen Pai; Chin-Hwa Hu; Wen-Shyong Tzou (J. Comput. Biol., 2021)

PepTracR: a Centralized Database for Pathogen Peptides and Neoepitopes based on 3D Structures information and Similarity-search in T-cell Immunotherapy Research. - Tao-Chuan Shih; Cing-Han Yang; Ying-Ja Chen; Li-Tzu Yeh; Chi-Wei Lu; Tun-Wen Pai (ICBBS, 2023)