Dysfunctional gene/protein networks in hepatitis C virus-induced hepatocellular cirrhosis and carcinoma. - Tao Huang 004; Guohui Ding 001; Yixue Li; Lei Liu; Eugene Tan; Hongyue Dai; Qi Liu 024; Zhidong Tu; Lu Xie (BCB, 2010)

TF-centered downstream gene set enrichment analysis: Inference of causal regulators by integrating TF-DNA interactions and protein post-translational modifications information. - Qi Liu 024; Yejun Tan; Tao Huang 004; Guohui Ding 001; Zhidong Tu; Lei Liu; Yixue Li; Hongyue Dai; Lu Xie (BMC Bioinform., 2010)

The role of Hepatitis C Virus in the dynamic protein interaction networks of hepatocellular cirrhosis and carcinoma. - Tao Huang 004; Lei Liu; Qi Liu 024; Guohui Ding 001; Yejun Tan; Zhidong Tu; Yixue Li; Hongyue Dai; Lu Xie (Int. J. Comput. Biol. Drug Des., 2011)

Predicting triplet of transcription factor - mediating enzyme - target gene by functional profiles. - Tao Huang 004; Lei Chen 007; Xiao-Jun Liu; Yu-Dong Cai 001 (Neurocomputing, 2011)

Novel Computational Methods and Tools in Biomedicine and Biopharmacy. - Yudong Cai 001; Tao Huang 004; Lei Chen 007; Shan Gao; Ning Zhang 005 (Comput. Math. Methods Medicine, 2014)

Promises and Challenges of Big Data Computing in Health Sciences. - Tao Huang 004; Liang Lan; Xuexian Fang; Peng An; Junxia Min; FuDi Wang (Big Data Res., 2015)

Machine Learning and Network Methods for Biology and Medicine. - Lei Chen 007; Tao Huang 004; Chuan Lu; Lin Lu; Dandan Li (Comput. Math. Methods Medicine, 2015)

Integrative analysis of methylation and transcriptional profiles to predict aging and construct aging specific cross-tissue networks. - Yin Wang; Tao Huang 004; Lu Xie; Lei Liu (BMC Syst. Biol., 2016)

Identification of novel proliferative diabetic retinopathy related genes on protein-protein interaction network. - Jian Zhang; Jing Yang 009; Tao Huang 004; Yang Shu; Lei Chen 007 (Neurocomputing, 2016)

Prediction of protein N-formylation and comparison with N-acetylation based on a feature selection method. - You Zhou 005; Tao Huang 004; Guohua Huang; Ning Zhang 005; Xiangyin Kong; Yu-Dong Cai 001 (Neurocomputing, 2016)

Identify Key Sequence Features to Improve CRISPR sgRNA Efficacy. - Lei Chen 007; Shaopeng Wang; Yu-Hang Zhang; Jiarui Li; Zhi-Hao Xing; Jialiang Yang; Tao Huang 004; Yu-Dong Cai 001 (IEEE Access, 2017)

Analysis of cancer-related lncRNAs using gene ontology and KEGG pathways. - Lei Chen 007; Yu-Hang Zhang; Guohui Lu; Tao Huang 004; Yu-Dong Cai 001 (Artif. Intell. Medicine, 2017)

Prediction of synergistic anti-cancer drug combinations based on drug target network and drug induced gene expression profiles. - Xiangyi Li; Yingjie Xu; Hui Cui 003; Tao Huang 004; Disong Wang; Baofeng Lian; Wei Li; Guangrong Qin; Lanming Chen; Lu Xie (Artif. Intell. Medicine, 2017)

Identification of transcription factors that may reprogram lung adenocarcinoma. - Chenglin Liu; Yu-Hang Zhang; Tao Huang 004; Yudong Cai 001 (Artif. Intell. Medicine, 2017)

Machine learning and graph analytics in computational biomedicine. - Quan Zou 001; Lei Chen 007; Tao Huang 004; Zhenguo Zhang; Yungang Xu (Artif. Intell. Medicine, 2017)

Identifying Essential Signature Genes and Expression Rules Associated With Distinctive Development Stages of Early Embryonic Cells. - Lei Chen 007; Xiaoyong Pan; Tao Zeng 003; Yu-Hang Zhang; Tao Huang 004; Yu-Dong Cai 001 (IEEE Access, 2019)

Disease Cluster Detection and Functional Characterization. - Wei Guo 039; Tao Zeng 003; Tao Huang 004; Yu-Dong Cai 001 (IEEE Access, 2020)

Screening Dys-Methylation Genes and Rules for Cancer Diagnosis by Using the Pan-Cancer Study. - Yu-Hang Zhang; Tao Zeng 003; Xiaoyong Pan; Wei Guo 039; Zijun Gan; Yunhua Zhang; Tao Huang 004; Yu-Dong Cai 001 (IEEE Access, 2020)

Identifying Protein Subcellular Locations With Embeddings-Based node2loc. - Xiaoyong Pan; Lei Chen 007; Min Liu 020; Zhibin Niu; Tao Huang 004; Yu-Dong Cai 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

A Survey of Cross-Lingual Text Classification and Its Applications on Fake News Detection. - Liang Lan; Tao Huang 004; Yupeng Li 001; Yunya Song (World Sci. Annu. Rev. Artif. Intell., 2023)

Identification of key genes associated with persistent immune changes and secondary immune activation responses induced by influenza vaccination after COVID-19 recovery by machine learning methods. - Jingxin Ren; Xianchao Zhou; Ke Huang; Lei Chen 007; Wei Guo 039; Kaiyan Feng; Tao Huang 004; Yu-Dong Cai 001 (Comput. Biol. Medicine, 2024)

Identification of key gene expression associated with quality of life after recovery from COVID-19. - Jingxin Ren; Qian Gao; Xianchao Zhou; Lei Chen 007; Wei Guo 039; Kaiyan Feng; Tao Huang 004; Yu-Dong Cai 001 (Medical Biol. Eng. Comput., 2024)