rMFilter: acceleration of long read-based structure variation calling by chimeric read filtering. - Bo Liu 023; Tao Jiang 021; Siu-Ming Yiu; Junyi Li; Yadong Wang 001 (Bioinform., 2017)

rCANID: read Clustering and Assembly-based Novel Insertion Detection tool. - Yilei Fu; Tao Jiang 021; Bo Liu 023; Yadong Wang 001 (BIBM, 2018)

rMETL: sensitive mobile element insertion detection with long read realignment. - Tao Jiang 021; Bo Liu 023; Junyi Li; Yadong Wang 001 (Bioinform., 2019)

Assessment of Machine Learning Methods for Classification in Single Cell ATAC-seq. - Zhe Cui; Bo Liu 023; Liran Juan; Tianyi Zang; Tao Jiang 021; Yadong Wang 001 (BIBM, 2020)

SKSV: ultrafast structural variation detection from circular consensus sequencing reads. - Yadong Liu; Tao Jiang 021; Junhao Su; Bo Liu 023; Tianyi Zang; Yadong Wang 001 (Bioinform., 2021)

Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation. - Tao Jiang 021; Shiqi Liu; Shuqi Cao; Yadong Liu; Zhe Cui; Yadong Wang 001; Hongzhe Guo (BMC Bioinform., 2021)

Comparison of the Nanopore and PacBio sequencing technologies for DNA 5-methylcytosine detection. - Yadong Liu; Zhongyu Liu; Tao Jiang 021; Tianyi Zang; Yadong Wang 001 (BIBM, 2022)

Evaluation of classification in single cell atac-seq data with machine learning methods. - Hongzhe Guo; Zhongbo Yang; Tao Jiang 021; Shiqi Liu; Yadong Wang 001; Zhe Cui (BMC Bioinform., 2022)

Comprehensive evaluation of RNA-seq alignment methods based on long-read sequencing data. - Yadong Liu; Hongzhe Guo; Zhenhao Lu; Yadong Wang 001; Zhongyu Liu; Tao Jiang 021 (BIBM, 2023)

Identifying cancer driver genes using a two-stage random walk with restart on a gene interaction network. - Ping Meng; Guohua Wang; Hongzhe Guo; Tao Jiang 021 (Comput. Biol. Medicine, 2023)

Reply: Correspondence on NanoVar's performance outlined by Jiang T. et al. in 'Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation'. - Tao Jiang 021; Shiqi Liu; Hongzhe Guo (BMC Bioinform., 2023)

miniSNV: accurate and fast single nucleotide variant calling from nanopore sequencing data. - Miao Cui; Yadong Liu; Xian Yu; Hongzhe Guo; Tao Jiang 021; Yadong Wang 001; Bo Liu 023 (Briefings Bioinform., 2024)

SVDF: enhancing structural variation detect from long-read sequencing via automatic filtering strategies. - Heng Hu; Runtian Gao; Wentao Gao; Bo Gao; Zhongjun Jiang; Murong Zhou; Guohua Wang; Tao Jiang 021 (Briefings Bioinform., 2024)

DIRMC: a database of immunotherapy-related molecular characteristics. - Yue Liu; Yuhuan Zhou; Xiumei Hu; Wuri Le-Ge; Haoyan Wang; Tao Jiang 021; Junyi Li; Yang Hu 008; Yadong Wang 001 (Database J. Biol. Databases Curation, 2024)

SVHunter: long-read-based structural variation detection through the transformer model. - Runtian Gao; Heng Hu; Zhongjun Jiang; Shuqi Cao; Guohua Wang; Yuming Zhao; Tao Jiang 021 (Briefings Bioinform., 2025)