The design of reversible gate and reversible sequential circuit based on DNA computing. - Tao Song 001; Shudong Wang; Xun Wang 010 (ISKE, 2008)

DNA Computing. - Tao Song 001; Xun Wang 010; Shudong Wang; Yun Jiang (Int. J. Nanotechnol. Mol. Comput., 2010)

P Systems with 2D Picture Grammars. - Tao Song 001; Xiangxiang Zeng (BIC-TA, 2011)

Spiking Neural P Systems for Arithmetic Operations. - Xiangxiang Zeng; Tao Song 001; Linqiang Pan; Xingyi Zhang 001 (BIC-TA, 2011)

Stock Price Forecast Using Tree Augmented Naïve (TAN) Bayes. - Yuanlu Liao; Xiangxiang Zeng; Tao Song 001; Lianfeng Zhang 004 (BIC-TA, 2013)

Spiking neural P systems with anti-spikes and without annihilating priority working in a 'flip-flop' way. - Gangjun Tan; Tao Song 001; Zhihua Chen; Xiangxiang Zeng (Int. J. Comput. Sci. Math., 2013)

Asynchronous spiking neural P systems with local synchronization. - Tao Song 001; Linqiang Pan; Gheorghe Paun (Inf. Sci., 2013)

Time-Free Solution to Hamilton Path Problems Using P Systems with d-Division. - Tao Song 001; Xun Wang 010; Hongjiang Zheng (J. Appl. Math., 2013)

Homogenous spiking neural P systems with anti-spikes. - Tao Song 001; Xun Wang 010; Zhujin Zhang; Zhihua Chen (Neural Comput. Appl., 2014)

Spiking Neural P Systems with Thresholds. - Xiangxiang Zeng; Xingyi Zhang 001; Tao Song 001; Linqiang Pan (Neural Comput., 2014)

Time-free solution to SAT problem using P systems with active membranes. - Tao Song 001; Luis F. Macías-Ramos; Linqiang Pan; Mario J. Pérez-Jiménez (Theor. Comput. Sci., 2014)

Spiking neural P systems with rules on synapses. - Tao Song 001; Linqiang Pan; Gheorghe Paun (Theor. Comput. Sci., 2014)

Extending Simulation of Asynchronous Spiking Neural P Systems in P-Lingua. - Luis F. Macías-Ramos; Mario J. Pérez-Jiménez; Tao Song 001; Linqiang Pan (Fundam. Informaticae, 2015)

A P_Lingua Based Simulator for P Systems with Symport/Antiport Rules. - Luis F. Macías-Ramos; Luis Valencia-Cabrera; Bosheng Song; Tao Song 001; Linqiang Pan; Mario J. Pérez-Jiménez (Fundam. Informaticae, 2015)

Asynchronous spiking neural P systems with rules on synapses. - Tao Song 001; Quan Zou 001; Xiangrong Liu; Xiangxiang Zeng (Neurocomputing, 2015)

Time-free solution to SAT problem by P systems with active membranes and standard cell division rules. - Bosheng Song; Tao Song 001; Linqiang Pan (Nat. Comput., 2015)

Spiking neural P systems with structural plasticity. - Francis George C. Cabarle; Henry N. Adorna; Mario J. Pérez-Jiménez; Tao Song 001 (Neural Comput. Appl., 2015)

Asynchronous Spiking Neural P Systems with Anti-Spikes. - Tao Song 001; Xiangrong Liu; Xiangxiang Zeng (Neural Process. Lett., 2015)

Homogenous Spiking Neural P Systems with Inhibitory Synapses. - Tao Song 001; Xun Wang 010 (Neural Process. Lett., 2015)

Spiking neural P systems with request rules. - Tao Song 001; Linqiang Pan (Neurocomputing, 2016)

Design of logic gates using spiking neural P systems with homogeneous neurons and astrocytes-like control. - Tao Song 001; Pan Zheng 001; M. L. Dennis Wong; Xun Wang 010 (Inf. Sci., 2016)

NES-REBS: A novel nuclear export signal prediction method using regular expressions and biochemical properties. - Tingfang Wu; Xun Wang 010; Zheng Zhang; Faming Gong; Tao Song 001; Zhihua Chen; Pan Zhang; Yang Zhao (J. Bioinform. Comput. Biol., 2016)

An Optimized Feedforward Decoupling PD Register Control Method of Roll-to-Roll Web Printing Systems. - Zhihua Chen; Juan-juan He; Ying Zheng; Tao Song 001; Zhonghua Deng (IEEE Trans Autom. Sci. Eng., 2016)

Multi-Objective Evolutionary Algorithm Based on Decomposition for Energy-aware Scheduling in Heterogeneous Computing Systems. - Sisi Yuan; Gaoshan Deng; Quanxi Feng; Pan Zheng 001; Tao Song 001 (J. Univers. Comput. Sci., 2017)

Theory and Application of Bio-inspired Intelligence and Methods. - Xingyi Zhang 001; Alfonso Rodríguez-Patón Aradas; Xiangxiang Zeng; Tao Song 001 (J. Univers. Comput. Sci., 2017)

A time-free uniform solution to subset sum problem by tissue P systems with cell division. - Bosheng Song; Tao Song 001; Linqiang Pan (Math. Struct. Comput. Sci., 2017)

LncRNA-disease association prediction based on neighborhood information aggregation in neural network. - Hongjie Chen 003; Xun Wang 010; Xuan Zhang 010; Xiangxiang Zeng; Tao Song 001; Alfonso Rodríguez-Patón (BIBM, 2018)

A Parallel Bioinspired Framework for Numerical Calculations Using Enzymatic P System With an Enzymatic Environment. - Shanchen Pang; Tong Ding; Alfonso Rodríguez-Patón; Tao Song 001; Pan Zheng 001 (IEEE Access, 2018)

Spiking Neural P Systems With Colored Spikes. - Tao Song 001; Alfonso Rodríguez-Patón; Pan Zheng 001; Xiangxiang Zeng (IEEE Trans. Cogn. Dev. Syst., 2018)

Double Layers Self-Organized Spiking Neural P Systems With Anti-Spikes for Fingerprint Recognition. - Tongmao Ma; Shaohua Hao; Xun Wang 010; Alfonso Rodríguez-Patón; Shudong Wang; Tao Song 001 (IEEE Access, 2019)

An Improved Convolutional Network Architecture Based on Residual Modeling for Person Re-Identification in Edge Computing. - Shanchen Pang; Sibo Qiao; Tao Song 001; Jianli Zhao 002; Pan Zheng 001 (IEEE Access, 2019)

U-Next: A Novel Convolution Neural Network With an Aggregation U-Net Architecture for Gallstone Segmentation in CT Images. - Tao Song 001; Fan Meng; Alfonso Rodríguez-Patón; Pibao Li; Pan Zheng 001; Xun Wang 010 (IEEE Access, 2019)

Server Consolidation Energy-Saving Algorithm Based on Resource Reservation and Resource Allocation Strategy. - Tao Song 001; Yuelin Wang; Guiling Li; Shanchen Pang (IEEE Access, 2019)

A Real-Time Fire Detection Method from Video with Multifeature Fusion. - Faming Gong; Chuantao Li; Wenjuan Gong; Xin Li 079; Xiangbing Yuan; Yuhui Ma; Tao Song 001 (Comput. Intell. Neurosci., 2019)

A Parallel Image Skeletonizing Method Using Spiking Neural P Systems with Weights. - Tao Song 001; Shanchen Pang; Shaohua Hao; Alfonso Rodríguez-Patón; Pan Zheng 001 (Neural Process. Lett., 2019)

Repositioning Molecules of Chinese Medicine to Targets of SARS-Cov-2 by Deep Learning Method. - Tao Song 001; Yue Zhong; Mao Ding; Renteng Zhao; Qingyu Tian; Zhenzhen Du; Dayan Liu; Jiali Liu; Yufeng Deng (BIBM, 2020)

LDCNN-DTI: A Novel Light Deep Convolutional Neural Network for Drug-Target Interaction Predictions. - Shudong Wang; Zhenzhen Du; Mao Ding; Renteng Zhao; Alfonso Rodríguez-Patón; Tao Song 001 (BIBM, 2020)

Discriminative Correlation Filter for Long-Time Tracking. - Faming Gong; Hanbing Yue; Xiangbing Yuan; Wenjuan Gong; Tao Song 001 (Comput. J., 2020)

VGG16-T: A Novel Deep Convolutional Neural Network with Boosting to Identify Pathological Type of Lung Cancer in Early Stage by CT Images. - Shanchen Pang; Fan Meng; Xun Wang 010; Jianmin Wang 016; Tao Song 001; Xingguang Wang; Xiaochun Cheng (Int. J. Comput. Intell. Syst., 2020)

A Deep Learning Method With Merged LSTM Neural Networks for SSHA Prediction. - Tao Song 001; Jingyu Jiang; Wei Li 203; Danya Xu (IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens., 2020)

On the Computational Power of Asynchronous Axon Membrane Systems. - Tao Song 001; Pan Zheng 001; M. L. Dennis Wong; Min Jiang 005; Xiangxiang Zeng (IEEE Trans. Emerg. Top. Comput. Intell., 2020)

MMDA: Disease Analysis Model Based on Anthropometric Measurement. - Tao Song 001; Rui Zhang; Yukun Dong; Fubin Liu; Yu Zhang 137; Rongrong Peng (BIBM, 2021)

Use Ensemble Learning to Estimate the Population and Assets Exposed to Tropical Cyclones. - Fan Meng; Tongmao Ma; Pengfei Xie; Handan Sun; Danya Xu; Tao Song 001 (IGARSS, 2021)

Cyclone Identify using Two-Branch Convolutional Neural Network from Global Forecasting System Analysis. - Fan Meng; Qingyu Tian; Handan Sun; Danya Xu; Tao Song 001 (IGARSS, 2021)

Tropical Cyclone Size Estimation Using Deep Convolutional Neural Network. - Fan Meng; Pengfei Xie; Ying Li; Handan Sun; Danya Xu; Tao Song 001 (IGARSS, 2021)

Visual Prediction of Tropical Cyclones with Deep Convolutional Generative Adversarial Networks. - Pengfei Xie; Fan Meng; Bowen Li; Ying Li; Zhiyong Yu; Handan Sun; Tao Song 001; Danya Xu (IGARSS, 2021)

Mesh2Measure: A Novel Body Dimensions Measurement Based on 3D Human Model. - Tao Song 001; Rui Zhang; Yukun Dong; Xixi Tao; Hongcui Lu; Baohua Liu (INTETAIN, 2021)

Neural-like P systems with plasmids. - Francis George C. Cabarle; Xiangxiang Zeng; Niall Murphy; Tao Song 001; Alfonso Rodríguez-Patón; Xiangrong Liu (Inf. Comput., 2021)

An improved YOLOv3 model for detecting location information of ovarian cancer from CT images. - Xun Wang 010; Hanlin Li; Lisheng Wang; Yongzhi Yu; Hao Zhou; Lei Wang; Tao Song 001 (Intell. Data Anal., 2021)

NDFTC: A New Detection Framework of Tropical Cyclones from Meteorological Satellite Images with Deep Transfer Learning. - Shanchen Pang; Pengfei Xie; Danya Xu; Fan Meng; Xixi Tao; Bowen Li; Ying Li; Tao Song 001 (Remote. Sens., 2021)

A Short-Term Tropical Cyclone Intensity Forecasting Method Based on High-Order Tensor (Student Abstract). - Fan Meng; Handan Sun; Danya Xu; Pengfei Xie; Tao Song 001 (AAAI, 2022)

KG-DTI: a knowledge graph based deep learning method for drug-target interaction predictions and Alzheimer's disease drug repositions. - Shudong Wang; Zhenzhen Du; Mao Ding; Alfonso Rodríguez-Patón; Tao Song 001 (Appl. Intell., 2022)

AMDE: a novel attention-mechanism-based multidimensional feature encoder for drug-drug interaction prediction. - Shanchen Pang; Ying Zhang; Tao Song 001; Xudong Zhang; Xun Wang 010; Alfonso Rodríguez-Patón (Briefings Bioinform., 2022)

De novo molecular design with deep molecular generative models for PPI inhibitors. - Jianmin Wang 016; Yanyi Chu; Jiashun Mao; Hyeon-Nae Jeon; Haiyan Jin; Amir Zeb; Yuil Jang; Kwang-Hwi Cho; Tao Song 001; Kyoung Tai No (Briefings Bioinform., 2022)

Molecular substructure tree generative model for de novo drug design. - Shuang Wang; Tao Song 001; Shugang Zhang; Mingjian Jiang; Zhiqiang Wei 002; Zhen Li 024 (Briefings Bioinform., 2022)

TCR-GAN: Predicting tropical cyclone passive microwave rainfall using infrared imagery via generative adversarial networks. - Fan Meng; Tao Song 001; Danya Xu (CoRR, 2022)

ATDNNS: An adaptive time-frequency decomposition neural network-based system for tropical cyclone wave height real-time forecasting. - Fan Meng; Danya Xu; Tao Song 001 (Future Gener. Comput. Syst., 2022)

RGN: Residue-Based Graph Attention and Convolutional Network for Protein-Protein Interaction Site Prediction. - Shuang Wang; Wenqi Chen; Peifu Han; Xue Li 019; Tao Song 001 (J. Chem. Inf. Model., 2022)

DEEPStack-RBP: Accurate identification of RNA-binding proteins based on autoencoder feature selection and deep stacking ensemble classifier. - Qinqin Wei; Qingmei Zhang; Hongli Gao; Tao Song 001; Adil Salhi; Bin Yu 007 (Knowl. Based Syst., 2022)

Simulating Tropical Cyclone Passive Microwave Rainfall Imagery Using Infrared Imagery via Generative Adversarial Networks. - Fan Meng; Tao Song 001; Danya Xu (IEEE Geosci. Remote. Sens. Lett., 2022)

Inversion of Ocean Subsurface Temperature and Salinity Fields Based on Spatio-Temporal Correlation. - Tao Song 001; Wei Wei; Fan Meng; Jiarong Wang; Runsheng Han; Danya Xu (Remote. Sens., 2022)

DeepDualEPI: Predicting Promoter-Enhancer Interactions Based on DNA Sequence and Genomic Signals. - Tao Song 001; Haonan Song; Zhiyi Pan 003; Yuan Gao; Qing Yang; Xingguang Wang (BIBM, 2023)

Gene-MOE: A Sparsely-gated Framework for Pan-Cancer Genomic Analysis. - Xiangyu Meng 005; Tao Song 001; Qing Yang; Huanhuan Dai; Lian Qiao; Hongzhen Ding; Long Hao; Xun Wang 010 (CoRR, 2023)

Tropical Cyclone Intensity Probabilistic Forecasting System Based on Deep Learning. - Fan Meng; Kunlin Yang; Yichen Yao; Zhibin Wang; Tao Song 001 (Int. J. Intell. Syst., 2023)

MARPPI: boosting prediction of protein-protein interactions with multi-scale architecture residual network. - Xue Li 019; Peifu Han; Wenqi Chen; Changnan Gao; Shuang Wang; Tao Song 001; Muyuan Niu; Alfonso Rodríguez-Patón (Briefings Bioinform., 2023)

QuantumTox: Utilizing quantum chemistry with ensemble learning for molecular toxicity prediction. - Xun Wang 010; Lulu Wang; Shuang Wang; Yongqi Ren; Wenqi Chen; Xue Li 019; Peifu Han; Tao Song 001 (Comput. Biol. Medicine, 2023)

Identifying potential small molecule-miRNA associations via Robust PCA based on γ-norm regularization. - Shudong Wang; Chuanru Ren; Yulin Zhang; YunYin Li; Shanchen Pang; Tao Song 001 (Briefings Bioinform., 2023)

EEMD-ConvLSTM: a model for short-term prediction of two-dimensional wind speed in the South China Sea. - Handan Sun; Tao Song 001; Ying Li; Kunlin Yang; Danya Xu; Fan Meng (Appl. Intell., 2023)

Logical Rules Enhanced Multimodal Reasoning Based on Biomedical Knowledge Graph. - Peifu Han; Tao Song 001; Jianmin Wang 016 (BIBM, 2024)

MambaDTA: a novel Drug-Target Affinities prediction method with State-Space Model. - Dayan Liu; Tao Song 001; Shudong Wang (BIBM, 2024)

Transformer-Based Gene Expression Levels Prediction Using Multimodal Information. - Tao Song 001; Zhiyi Pan 003; Haonan Song; Yuan Gao; Huanhuan Dai; Xun Wang 010 (BIBM, 2024)

DCUI-MGraphDTA: Enabling Efficient Inference of a Drug-Target Binding Affinity Prediction Model on DCUs. - Tao Song 001; Siyu Zhang; Xiangyu Meng 005; Zeyang Zhu; Xianxi Zhu; Xun Wang 010 (BIBM, 2024)

KGM4DTI: A Depression Knowledge Graph-Driven Multi-semantic Multi-view Computational Framework for Drug-Target Interaction Prediction. - Xu Tian; Peifu Han; Xue Li 019; Hongzhen Ding; Wei He; Fengrui Jing; Shuang Wang; Xun Wang 010; Tao Song 001 (BIBM, 2024)

Exploring Efficient Partial Differential Equation Solution Using Speed Galerkin Transformer. - Xun Wang 010; Zeyang Zhu; Xiangyu Meng 005; Tao Song 001 (SC, 2024)

Uncertainty forecasting system for tropical cyclone tracks based on conformal prediction. - Fan Meng; Tao Song 001 (Expert Syst. Appl., 2024)

PED: a novel predictor-encoder-decoder model for Alzheimer drug molecular generation. - Dayan Liu; Tao Song 001; Kang Na; Shudong Wang (Frontiers Artif. Intell., 2024)

FraHMT: A Fragment-Oriented Heterogeneous Graph Molecular Generation Model for Target Proteins. - Shuang Wang; Dingming Liang; Jianmin Wang 016; Kaiyu Dong; Yunjing Zhang; Huicong Liang; Ximing Xu 001; Tao Song 001 (J. Chem. Inf. Model., 2024)

Probabilistic Estimation of Tropical Cyclone Intensity Based on Multi-Source Satellite Remote Sensing Images. - Tao Song 001; Kunlin Yang; Xin Li 079; Shiqiu Peng; Fan Meng (Remote. Sens., 2024)

Convformer: A Model for Reconstructing Ocean Subsurface Temperature and Salinity Fields Based on Multi-Source Remote Sensing Observations. - Tao Song 001; Guangxu Xu; Kunlin Yang; Xin Li 079; Shiqiu Peng (Remote. Sens., 2024)

MIPPIS: protein-protein interaction site prediction network with multi-information fusion. - Shuang Wang; Kaiyu Dong; Dingming Liang; Yunjing Zhang; Xue Li 019; Tao Song 001 (BMC Bioinform., 2024)

Interface-aware molecular generative framework for protein-protein interaction modulators. - Jianmin Wang 016; Jiashun Mao; Chunyan Li 002; Hongxin Xiang; Xun Wang 010; Shuang Wang; Zixu Wang; Yangyang Chen 006; Yuquan Li; Kyoung Tai No; Tao Song 001; Xiangxiang Zeng (J. Cheminformatics, 2024)

GTE-PPIS: a protein-protein interaction site predictor based on graph transformer and equivariant graph neural network. - Xun Wang 010; Tongyu Han; Runqiu Feng; Zhijun Xia; Hanyu Wang; Wenqian Yu; Huanhuan Dai; Haonan Song; Tao Song 001 (Briefings Bioinform., 2025)

Multi-scale low-frequency enhanced spectral neural operator for reducing low-frequency error in partial differential equations solving. - Fengrui Jing; Chuchu Zhai; Peizhi Zhao; Xue Li 019; Peifu Han; Hongzhen Ding; Yunlong Dong; Long Hao; Xu Tian; Tao Song 001 (Eng. Appl. Artif. Intell., 2025)

PMODiff: Physics-Informed Multi-Objective Optimization Diffusion Model for Protein-Specific 3D Molecule Generation. - Yaoxiang Zhang; Shuang Wang; Junteng Ma; Ze Zhang; Tao Song 001 (J. Chem. Inf. Model., 2025)

TGF-M: Topology-augmented geometric features enhance molecular property prediction. - Wei He; Xu Tian; Xue Li 019; Peifu Han; Shuang Wang; Lin Liu; Tao Song 001 (PLoS Comput. Biol., 2025)

Tropical Cyclone Image Super-Resolution via Multimodality Fusion. - Tao Song 001; Kunlin Yang; Fan Meng; Xin Li 079; Handan Sun; Chenglizhao Chen (ACM Trans. Multim. Comput. Commun. Appl., 2025)

Inference and training acceleration of deep learning partial differential equation solver. - Xun Wang 010; Xianxi Zhu; Xiangyu Meng 005; Zeyang Zhu; Siyu Zhang; Tao Song 001 (J. Supercomput., 2025)

Predicting Mutation-Disease Associations Through Protein Interactions Via Deep Learning. - Xue Li 019; Ben Cao; Jianmin Wang 016; Xiangyu Meng 005; Shuang Wang; Yu Huang 004; Enrico Petretto; Tao Song 001 (IEEE J. Biomed. Health Informatics, 2025)