Identifying microRNA targets in epithelial-mesenchymal transition using joint-intervention causal inference. - Thuc Duy Le; Junpeng Zhang 001; Lin Liu 003; Buu Minh Thanh Truong; Shu Hu 001; Taosheng Xu; Jiuyong Li (CSBio, 2017)

CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation and visualization. - Taosheng Xu; Thuc Duy Le; Lin Liu 003; Ning Su; Rujing Wang; Bing-Yu Sun; Antonio Colaprico; Gianluca Bontempi; Jiuyong Li (Bioinform., 2017)

ParallelPC: An R Package for Efficient Causal Exploration in Genomic Data. - Thuc Duy Le; Taosheng Xu; Lin Liu 003; Hu Shu; Tao Hoang; Jiuyong Li (PAKDD (Workshops), 2018)

miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase. - Taosheng Xu; Ning Su; Lin Liu 003; Junpeng Zhang 001; Hongqiang Wang; Weijia Zhang 001; Jie Gui; Kui Yu; Jiuyong Li; Thuc Duy Le (BMC Bioinform., 2018)

Identifying miRNA-mRNA regulatory relationships in breast cancer with invariant causal prediction. - Vu Viet Hoang Pham; Junpeng Zhang 001; Lin Liu 003; Buu Minh Thanh Truong; Taosheng Xu; Trung T. Nguyen; Jiuyong Li; Thuc Duy Le (BMC Bioinform., 2019)

miRspongeR: an R/Bioconductor package for the identification and analysis of miRNA sponge interaction networks and modules. - Junpeng Zhang 001; Lin Liu 003; Taosheng Xu; Yong Xie; Chunwen Zhao; Jiuyong Li; Thuc Duy Le (BMC Bioinform., 2019)

Identifying miRNA synergism using multiple-intervention causal inference. - Junpeng Zhang 001; Vu Viet Hoang Pham; Lin Liu 003; Taosheng Xu; Buu Minh Thanh Truong; Jiuyong Li; Nini Rao; Thuc Duy Le (BMC Bioinform., 2019)

Correction to: Identifying miRNA synergism using multiple-intervention causal inference. - Junpeng Zhang 001; Vu Viet Hoang Pham; Lin Liu 003; Taosheng Xu; Buu Minh Thanh Truong; Jiuyong Li; Nini Rao; Thuc Duy Le (BMC Bioinform., 2020)

A novel single-cell based method for breast cancer prognosis. - Xiaomei Li; Lin Liu 003; Gregory J. Goodall; Andreas W. Schreiber; Taosheng Xu; Jiuyong Li; Thuc Duy Le (PLoS Comput. Biol., 2020)

LMSM: A modular approach for identifying lncRNA related miRNA sponge modules in breast cancer. - Junpeng Zhang 001; Taosheng Xu; Lin Liu 003; Wu Zhang; Chunwen Zhao; Sijing Li; Jiuyong Li; Nini Rao; Thuc Duy Le (PLoS Comput. Biol., 2020)

Uncovering the roles of microRNAs/lncRNAs in characterising breast cancer subtypes and prognosis. - Xiaomei Li; Buu Minh Thanh Truong; Taosheng Xu; Lin Liu 003; Jiuyong Li; Thuc Duy Le (BMC Bioinform., 2021)

Exploring cell-specific miRNA regulation with single-cell miRNA-mRNA co-sequencing data. - Junpeng Zhang 001; Lin Liu 003; Taosheng Xu; Wu Zhang; Chunwen Zhao; Sijing Li; Jiuyong Li; Nini Rao; Thuc Duy Le (BMC Bioinform., 2021)

Structured Sparse Non-negative Matrix Factorization with L20-Norm for scRNA-seq Data Analysis. - Wenwen Min; Taosheng Xu; Xiang Wan; Tsung-Hui Chang (CoRR, 2021)

Multimodal attention-based variational autoencoder for clinical risk prediction. - Xiaoyu Li; Taosheng Xu; Jinyu Chen; Jun Wan 005; Wenwen Min (BIBM, 2023)

Weighted Sparse Partial Least Squares for Joint Sample and Feature Selection. - Wenwen Min; Taosheng Xu; Chris Ding (CoRR, 2023)

Structured Sparse Non-Negative Matrix Factorization With $ ell _{2,0}$ℓ2,0-Norm. - Wenwen Min; Taosheng Xu; Xiang Wan; Tsung-Hui Chang (IEEE Trans. Knowl. Data Eng., 2023)

Masked Conditional Diffusion Model with GNN for Spatial Transcriptomics Data Imputation. - Xiaoyu Li; Wenwen Min; Shunfang Wang; Changmiao Wang; Taosheng Xu (BIBM, 2024)

scASDC: Attention Enhanced Structural Deep Clustering for Single-cell RNA-seq Data. - Wenwen Min; Zhen Wang; Fangfang Zhu; Taosheng Xu; Guangsheng Wu; Shunfang Wang (BIBM, 2024)

ICHPro: Intracerebral Hemorrhage Prognosis Classification via Joint-Attention Fusion-Based 3D Cross-Modal Network. - Xinlei Yu; Xinyang Li; Ruiquan Ge; Shibin Wu; Ahmed Elazab; Jichao Zhu; Lingyan Zhang; Gangyong Jia; Taosheng Xu; Xiang Wan; Changmiao Wang (ISBI, 2024)

stMCDI: Masked Conditional Diffusion Model with Graph Neural Network for Spatial Transcriptomics Data Imputation. - Xiaoyu Li; Wenwen Min; Shunfang Wang; Changmiao Wang; Taosheng Xu (CoRR, 2024)

scASDC: Attention Enhanced Structural Deep Clustering for Single-cell RNA-seq Data. - Wenwen Min; Zhen Wang; Fangfang Zhu; Taosheng Xu; Shunfang Wang (CoRR, 2024)