Extremal Sequence Theory. - Taoyang Wu (ACiD, 2006)

On the Subgroup Distance Problem. - Christoph Buchheim; Peter J. Cameron; Taoyang Wu (Electron. Colloquium Comput. Complex., 2006)

The complexity of the Weight Problem for permutation groups. - Peter J. Cameron; Taoyang Wu (Electron. Notes Discret. Math., 2007)

Barriers in metric spaces. - Andreas W. M. Dress; Vincent Moulton; Andreas Spillner 001; Taoyang Wu (Appl. Math. Lett., 2009)

On the guessing number of shift graphs. - Taoyang Wu; Peter J. Cameron; Søren Riis (J. Discrete Algorithms, 2009)

Refining Phylogenetic Trees Given Additional Data: An Algorithm Based on Parsimony. - Taoyang Wu; Vincent Moulton; Mike A. Steel (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

A note on single-linkage equivalence. - Andreas W. M. Dress; Taoyang Wu; XiaoMing Xu (Appl. Math. Lett., 2010)

The complexity of the weight problem for permutation and matrix groups. - Peter J. Cameron; Taoyang Wu (Discret. Math., 2010)

Network model and efficient method for detecting relative duplications or horizontal gene transfers. - Louxin Zhang; Yen Kaow Ng; Taoyang Wu; Yu Zheng 018 (ICCABS, 2011)

Structural properties of the reconciliation space and their applications in enumerating nearly-optimal reconciliations between a gene tree and a species tree. - Taoyang Wu; Louxin Zhang (BMC Bioinform., 2011)

The sum of the distances between the leaves of a tree and the 'semi-regular' property. - László A. Székely; Hua Wang 003; Taoyang Wu (Discret. Math., 2011)

Reconstruction of Network Evolutionary History from Extant Network Topology and Duplication History. - Si Li 003; Kwok Pui Choi; Taoyang Wu; Louxin Zhang (ISBRA, 2012)

Injective optimal realizations of finite metric spaces. - Jack H. Koolen; Alice Lesser; Vincent Moulton; Taoyang Wu (Discret. Math., 2012)

A Linear-Time Algorithm for Reconciliation of Non-binary Gene Tree and Binary Species Tree. - Yu Zheng 018; Taoyang Wu; Louxin Zhang (COCOA, 2013)

Obtaining splits from cut sets of tight spans. - Andreas W. M. Dress; Vincent Moulton; Andreas Spillner 001; Taoyang Wu (Discret. Appl. Math., 2013)

On the Neighborhoods of Trees. - Peter J. Humphries; Taoyang Wu (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Maximum Likelihood Inference of the Evolutionary History of a PPI Network from the Duplication History of Its Proteins. - Si Li 003; Kwok Pui Choi; Taoyang Wu; Louxin Zhang (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Degree distribution of large networks generated by the partial duplication model. - Si Li 003; Kwok Pui Choi; Taoyang Wu (Theor. Comput. Sci., 2013)

Representing Partitions on Trees. - Katharina T. Huber; Vincent Moulton; Charles Semple; Taoyang Wu (SIAM J. Discret. Math., 2014)

A parsimony-based metric for phylogenetic trees. - Vincent Moulton; Taoyang Wu (Adv. Appl. Math., 2015)

The combinatorics of tandem duplication. - Luca Penso Dolfin; Taoyang Wu; Chris D. Greenman (Discret. Appl. Math., 2015)

Optimal realizations of two-dimensional, totally-decomposable metrics. - Sven Herrmann; Jack H. Koolen; Alice Lesser; Vincent Moulton; Taoyang Wu (Discret. Math., 2015)

The minimum evolution problem is hard: a link between tree inference and graph clustering problems. - Sarah Bastkowski; Vincent Moulton; Andreas Spillner 001; Taoyang Wu (Bioinform., 2016)

Reduction rules for the maximum parsimony distance on phylogenetic trees. - Steven Kelk; Mareike Fischer 001; Vincent Moulton; Taoyang Wu (Theor. Comput. Sci., 2016)

Reconstructing Phylogenetic Level-1 Networks from Nondense Binet and Trinet Sets. - Katharina T. Huber; Leo van Iersel; Vincent Moulton; Céline Scornavacca; Taoyang Wu (Algorithmica, 2017)

Binets: fundamental building blocks for phylogenetic networks. - Leo van Iersel; Vincent Moulton; Eveline de Swart; Taoyang Wu (CoRR, 2017)

Quarnet inference rules for level-1 networks. - Katharina T. Huber; Vincent Moulton; Charles Semple; Taoyang Wu (CoRR, 2017)

A cubic-time algorithm for computing the trinet distance between level-1 networks. - Vincent Moulton; James Oldman; Taoyang Wu (Inf. Process. Lett., 2017)

SPECTRE: a suite of phylogenetic tools for reticulate evolution. - Sarah Bastkowski; Daniel Mapleson; Andreas Spillner 001; Taoyang Wu; Monika Balvociute; Vincent Moulton (Bioinform., 2018)

Treewidth distance on phylogenetic trees. - Steven Kelk; Georgios Stamoulis; Taoyang Wu (Theor. Comput. Sci., 2018)

UPGMA and the normalized equidistant minimum evolution problem. - Vincent Moulton; Andreas Spillner 001; Taoyang Wu (Theor. Comput. Sci., 2018)

Hierarchies from Lowest Stable Ancestors in Nonbinary Phylogenetic Networks. - Katharina T. Huber; Vincent Moulton; Taoyang Wu (J. Classif., 2019)

Treewidth of display graphs: bounds, brambles and applications. - Remie Janssen; Mark Jones 001; Steven Kelk; Georgios Stamoulis; Taoyang Wu (J. Graph Algorithms Appl., 2019)

Significance of differential allelic expression in phenotypic plasticity and evolutionary potential of microbial eukaryotes. - Ben P. Tatman; Thomas Mock; Taoyang Wu; Cock van Oosterhout (Quant. Biol., 2021)

Evaluating the performance of dropout imputation and clustering methods for single-cell RNA sequencing data. - Junlin Xu; Lingyu Cui; Jujuan Zhuang; Yajie Meng; Pingping Bing; Binsheng He; Geng Tian; Choi Kwok Pui; Taoyang Wu; Bing Wang; Jialiang Yang (Comput. Biol. Medicine, 2022)

Posets and Spaces of $k$-Noncrossing RNA Structures. - Vincent Moulton; Taoyang Wu (SIAM J. Discret. Math., 2022)

Encoding and ordering X-cactuses. - Andrew R. Francis; Katharina T. Huber; Vincent Moulton; Taoyang Wu (Adv. Appl. Math., 2023)

Planar Rooted Phylogenetic Networks. - Vincent Moulton; Taoyang Wu (IEEE ACM Trans. Comput. Biol. Bioinform., 2023)