General formulation and evaluation of agglomerative clustering methods with metric and non-metric distances. - Jorma Boberg; Tapio Salakoski (Pattern Recognit., 1993)

Representative noise-free complete-link classification with application to protein structures. - Jorma Boberg; Tapio Salakoski (Pattern Recognit., 1997)

BioWAP, mobile Internet service for bioinformatics. - Pentti Riikonen; Jorma Boberg; Tapio Salakoski; Mauno Vihinen (Bioinform., 2001)

Mobile access to biological databases on the Internet. - Pentti Riikonen; Jorma Boberg; Tapio Salakoski; Mauno Vihinen (IEEE Trans. Biomed. Eng., 2002)

Analysis of Link Grammar on Biomedical Dependency Corpus Targeted at Protein-Protein Interactions. - Sampo Pyysalo; Filip Ginter; Tapio Pahikkala; Jorma Boberg; Jouni Järvinen; Tapio Salakoski; Jeppe Koivula (NLPBA/BioNLP, 2004)

Extracting Protein-Protein Interaction Sentences by Applying Rough Set Data Analysis. - Filip Ginter; Tapio Pahikkala; Sampo Pyysalo; Jorma Boberg; Jouni Järvinen; Tapio Salakoski (Rough Sets and Current Trends in Computing, 2004)

Ontology-Based Feature Transformations: A Data-Driven Approach. - Filip Ginter; Sampo Pyysalo; Jorma Boberg; Jouni Järvinen; Tapio Salakoski (EsTAL, 2004)

New Techniques for Disambiguation in Natural Language and Their Application to Biological Text. - Filip Ginter; Jorma Boberg; Jouni Järvinen; Tapio Salakoski (J. Mach. Learn. Res., 2004)

Web Services for DNA Sequence Analysis. - Denis Shestakov; Tapio Salakoski (DEXA Workshops, 2005)

Kernels Incorporating Word Positional Information in Natural Language Disambiguation Tasks. - Tapio Pahikkala; Sampo Pyysalo; Filip Ginter; Jorma Boberg; Jouni Järvinen; Tapio Salakoski (FLAIRS, 2005)

The Feasibility of Automatic Assessment and Feedback. - Mikko-Jussi Laakso; Tapio Salakoski; Ari Korhonen (CELDA, 2005)

Regularized Least-Squares for Parse Ranking. - Evgeni Tsivtsivadze; Tapio Pahikkala; Sampo Pyysalo; Jorma Boberg; Aleksandr Mylläri; Tapio Salakoski (IDA, 2005)

Contextual weighting for Support Vector Machines in literature mining: an application to gene versus protein name disambiguation. - Tapio Pahikkala; Filip Ginter; Jorma Boberg; Jouni Järvinen; Tapio Salakoski (BMC Bioinform., 2005)

On the visualization of the DNA sequence and its nucleotide content. - Aleksandr Mylläri; Tapio Salakoski; Alexey Pasechnik (SIGSAM Bull., 2005)

Multi-Perspective Study of Novice Learners Adopting the Visual Algorithm Simulation Exercise System TRAKLA2. - Mikko-Jussi Laakso; Tapio Salakoski; Linda Grandell; Xuemei Qiu; Ari Korhonen; Lauri Malmi (Informatics Educ., 2005)

Regular Approximation of Link Grammar. - Filip Ginter; Sampo Pyysalo; Jorma Boberg; Tapio Salakoski (FinTAL, 2006)

The Vowel Game: Continuous Real-Time Visualization for Pronunciation Learning with Vowel Charts. - Annu Paganus; Vesa-Petteri Mikkonen; Tomi Mäntylä; Sami Nuuttila; Jouni Isoaho; Olli Aaltonen; Tapio Salakoski (FinTAL, 2006)

Incorporating External Information in Bayesian Classifiers Via Linear Feature Transformations. - Tapio Pahikkala; Jorma Boberg; Aleksandr Mylläri; Tapio Salakoski (FinTAL, 2006)

Segmental Duration in Utterance-Initial Environment: Evidence from Finnish Speech Corpora. - Tuomo Saarni; Jussi Hakokari; Jouni Isoaho; Olli Aaltonen; Tapio Salakoski (FinTAL, 2006)

Implementing a Rule-Based Speech Synthesizer on a Mobile Platform. - Tuomo Saarni; Jyri Paakkulainen; Tuomas Mäkilä; Jussi Hakokari; Olli Aaltonen; Jouni Isoaho; Tapio Salakoski (FinTAL, 2006)

Locality-Convolution Kernel and Its Application to Dependency Parse Ranking. - Evgeni Tsivtsivadze; Tapio Pahikkala; Jorma Boberg; Tapio Salakoski (IEA/AIE, 2006)

Relevance Ranking of Intensive Care Nursing Narratives. - Hanna Suominen; Tapio Pahikkala; Marketta Hiissa; Tuija Lehtikunnas; Barbro Back; Helena Karsten; Sanna Salanterä; Tapio Salakoski (KES (1), 2006)

Lexical adaptation of link grammar to the biomedical sublanguage: a comparative evaluation of three approaches. - Sampo Pyysalo; Tapio Salakoski; Sophie Aubin; Adeline Nazarenko (BMC Bioinform., 2006)

What about a simple language? Analyzing the difficulties in learning to program. - Linda Mannila; Mia Peltomäki; Tapio Salakoski (Comput. Sci. Educ., 2006)

Editorial comments. - Tapio Salakoski (Comput. Sci. Educ., 2006)

Evaluation of two dependency parsers on biomedical corpus targeted at protein-protein interactions. - Sampo Pyysalo; Filip Ginter; Tapio Pahikkala; Jorma Boberg; Jouni Järvinen; Tapio Salakoski (Int. J. Medical Informatics, 2006)

Evaluation of Protein Hydropathy Scales. - Satu Jääskeläinen; Pentti Riikonen; Tapio Salakoski; Mauno Vihinen (BIBM, 2007)

On the unification of syntactic annotations under the Stanford dependency scheme: A case study on BioInfer and GENIA. - Sampo Pyysalo; Filip Ginter; Veronika Laippala; Katri Haverinen; Juho Heimonen; Tapio Salakoski (BioNLP@ACL, 2007)

On Estimating the Scale of National Deep Web. - Denis Shestakov; Tapio Salakoski (DEXA, 2007)

Utterance-Initial Duration of Finnish Non-Plosive Consonants. - Tuomo Saarni; Jussi Hakokari; Olli Aaltonen; Jouni Isoaho; Tapio Salakoski (NODALIDA, 2007)

Role of Different Spectral Attributes in Vowel Categorization: the Case of Udmurt. - Janne Savela; Stina Ojala; Olli Aaltonen; Tapio Salakoski (NODALIDA, 2007)

Locality Kernels for Protein Classification. - Evgeni Tsivtsivadze; Jorma Boberg; Tapio Salakoski (WABI, 2007)

BioInfer: a corpus for information extraction in the biomedical domain. - Sampo Pyysalo; Filip Ginter; Juho Heimonen; Jari Björne; Jorma Boberg; Jouni Järvinen; Tapio Salakoski (BMC Bioinform., 2007)

Towards automated classification of intensive care nursing narratives. - Marketta Hiissa; Tapio Pahikkala; Hanna Suominen; Tuija Lehtikunnas; Barbro Back; Helena Karsten; Sanna Salanterä; Tapio Salakoski (Int. J. Medical Informatics, 2007)

Applying language technology to nursing documents: Pros and cons with a focus on ethics. - Hanna Suominen; Tuija Lehtikunnas; Barbro Back; Helena Karsten; Tapio Salakoski; Sanna Salanterä (Int. J. Medical Informatics, 2007)

A Graph Kernel for Protein-Protein Interaction Extraction. - Antti Airola; Sampo Pyysalo; Jari Björne; Tapio Pahikkala; Filip Ginter; Tapio Salakoski (BioNLP, 2008)

Define and Visualize Your First Programming Language. - Mikko-Jussi Laakso; Erkki Kaila; Teemu Rajala; Tapio Salakoski (ICALT, 2008)

Correlation of utterance length and segmental duration in Finnish is questionable. - Jussi Hakokari; Tuomo Saarni; Jouni Isoaho; Tapio Salakoski (INTERSPEECH, 2008)

Investigating perception of places of articulation in sign and speech. - Stina Ojala; Olli Aaltonen; Tapio Salakoski (INTERSPEECH, 2008)

Utterance-level normalization for relative articulation rate analysis. - Tuomo Saarni; Jussi Hakokari; Jouni Isoaho; Tapio Salakoski (INTERSPEECH, 2008)

Automatic assessment of program visualization exercises. - Erkki Kaila; Teemu Rajala; Mikko-Jussi Laakso; Tapio Salakoski (Koli Calling, 2008)

Efficient AUC Maximization with Regularized Least-Squares. - Tapio Pahikkala; Antti Airola; Hanna Suominen; Jorma Boberg; Tapio Salakoski (SCAI, 2008)

A Sparse Regularized Least-Squares Preference Learning Algorithm. - Evgeni Tsivtsivadze; Tapio Pahikkala; Antti Airola; Jorma Boberg; Tapio Salakoski (SCAI, 2008)

Detecting biological associations between genes based on the theory of phase synchronization. - Chang Sik Kim; Pentti Riikonen; Tapio Salakoski (Biosyst., 2008)

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning. - Antti Airola; Sampo Pyysalo; Jari Björne; Tapio Pahikkala; Filip Ginter; Tapio Salakoski (BMC Bioinform., 2008)

Comparative analysis of five protein-protein interaction corpora. - Sampo Pyysalo; Antti Airola; Juho Heimonen; Jari Björne; Filip Ginter; Tapio Salakoski (BMC Bioinform., 2008)

Effectiveness of Program Visualization: A Case Study with the ViLLE Tool. - Teemu Rajala; Mikko-Jussi Laakso; Erkki Kaila; Tapio Salakoski (J. Inf. Technol. Educ. Innov. Pract., 2008)

Kernels for Text Analysis. - Evgeni Tsivtsivadze; Tapio Pahikkala; Jorma Boberg; Tapio Salakoski (Advances of Computational Intelligence in Industrial Systems, 2008)

Extracting Complex Biological Events with Rich Graph-Based Feature Sets. - Jari Björne; Juho Heimonen; Filip Ginter; Antti Airola; Tapio Pahikkala; Tapio Salakoski (BioNLP@HLT-NAACL (Shared Task), 2009)

Integrated Data Management and Analysis Environment for Medical Longitudinal Research with Machine Learning Based Prediction Models. - Mika Laaksonen; Barbara Simell; Tapio Salakoski; Olli Simell (CSIE (1), 2009)

Efficient Hold-Out for Subset of Regressors. - Tapio Pahikkala; Hanna Suominen; Jorma Boberg; Tapio Salakoski (ICANNGA, 2009)

Evaluating Pain in Intensive Care. - Hanna Suominen; Heljä Lundgrén-Laine; Sanna Salanterä; Tapio Salakoski (Nursing Informatics, 2009)

Learning to Extract Biological Event and Relation Graphs. - Jari Björne; Filip Ginter; Juho Heimonen; Sampo Pyysalo; Tapio Salakoski (NODALIDA, 2009)

Parsing Clinical Finnish: Experiments with Rule-Based and Statistical Dependency Parsers. - Katri Haverinen; Filip Ginter; Veronika Laippala; Tapio Salakoski (NODALIDA, 2009)

Locality kernels for sequential data and their applications to parse ranking. - Evgeni Tsivtsivadze; Tapio Pahikkala; Jorma Boberg; Tapio Salakoski (Appl. Intell., 2009)

Effects, Experiences and Feedback from Studies of a Program Visualization Tool. - Erkki Kaila; Teemu Rajala; Mikko-Jussi Laakso; Tapio Salakoski (Informatics Educ., 2009)

Combining hidden Markov models and latent semantic analysis for topic segmentation and labeling: Method and clinical application. - Filip Ginter; Hanna Suominen; Sampo Pyysalo; Tapio Salakoski (Int. J. Medical Informatics, 2009)

Towards automated processing of clinical Finnish: Sublanguage analysis and a rule-based parser. - Veronika Laippala; Filip Ginter; Sampo Pyysalo; Tapio Salakoski (Int. J. Medical Informatics, 2009)

Matrix representations, linear transformations, and kernels for disambiguation in natural language. - Tapio Pahikkala; Sampo Pyysalo; Jorma Boberg; Jouni Järvinen; Tapio Salakoski (Mach. Learn., 2009)

Co-Regularized Least-Squares for Label Ranking. - Evgeni Tsivtsivadze; Tapio Pahikkala; Jorma Boberg; Tapio Salakoski; Tom Heskes (Preference Learning, 2010)

Dependency-Based PropBanking of Clinical Finnish. - Katri Haverinen; Filip Ginter; Timo Viljanen; Veronika Laippala; Tapio Salakoski (Linguistic Annotation Workshop, 2010)

Scaling up Biomedical Event Extraction to the Entire PubMed. - Jari Björne; Filip Ginter; Sampo Pyysalo; Jun'ichi Tsujii; Tapio Salakoski (BioNLP@ACL, 2010)

Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain. - Juho Heimonen; Jari Björne; Tapio Salakoski (BioNLP@ACL, 2010)

Applying Permutation Tests for Assessing the Statistical Significance of Wrapper Based Feature Selection. - Antti Airola; Tapio Pahikkala; Jorma Boberg; Tapio Salakoski (ICMLA, 2010)

Speeding Up Greedy Forward Selection for Regularized Least-Squares. - Tapio Pahikkala; Antti Airola; Tapio Salakoski (ICMLA, 2010)

Reflections on Koli Calling Conference: emergence of the Koli spirit. - Lauri Malmi; Tapio Salakoski (Koli Calling, 2010)

Conditional Ranking on Relational Data. - Tapio Pahikkala; Willem Waegeman; Antti Airola; Tapio Salakoski; Bernard De Baets (ECML/PKDD (2), 2010)

Host-IP clustering technique for deep web characterization. - Denis Shestakov; Tapio Salakoski (SAC, 2010)

Complex event extraction at PubMed scale. - Jari Björne; Filip Ginter; Sampo Pyysalo; Jun'ichi Tsujii; Tapio Salakoski (Bioinform., 2010)

Learning intransitive reciprocal relations with kernel methods. - Tapio Pahikkala; Willem Waegeman; Evgeni Tsivtsivadze; Tapio Salakoski; Bernard De Baets (Eur. J. Oper. Res., 2010)

Accuracy of protein hydropathy predictions. - Satu Jääskeläinen; Pentti Riikonen; Tapio Salakoski; Mauno Vihinen (Int. J. Data Min. Bioinform., 2010)

A comparison of AUC estimators in small-sample studies. - Antti Airola; Tapio Pahikkala; Willem Waegeman; Bernard De Baets; Tapio Salakoski (MLSB, 2010)

Generalizing Biomedical Event Extraction. - Jari Björne; Tapio Salakoski (BioNLP@ACL (Shared Task), 2011)

EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions. - Sofie Van Landeghem; Filip Ginter; Yves Van de Peer; Tapio Salakoski (BioNLP@ACL, 2011)

A Dependency-based Analysis of Treebank Annotation Errors. - Katri Haverinen; Filip Ginter; Veronika Laippala; Samuel Kohonen; Timo Viljanen; Jenna Nyblom; Tapio Salakoski (DepLing, 2011)

Learning Valued Relations from Data. - Willem Waegeman; Tapio Pahikkala; Antti Airola; Tapio Salakoski; Bernard De Baets (Eurofuse, 2011)

Comparing the collaborative and independent viewing of program visualizations. - Teemu Rajala; Erkki Kaila; Johannes Holvitie; Riku Haavisto; Mikko-Jussi Laakso; Tapio Salakoski (FIE, 2011)

Fast and parallelized greedy forward selection of genetic variants in Genome-wide association studies. - Sebastian Okser; Tapio Pahikkala; Antti Airola; Tero Aittokallio; Tapio Salakoski (GENSiPS, 2011)

An Improved Training Algorithm for the Linear Ranking Support Vector Machine. - Antti Airola; Tapio Pahikkala; Tapio Salakoski (ICANN (1), 2011)

Greedy Regularized Least-Squares for Multi-task Learning. - Pekka Naula; Tapio Pahikkala; Antti Airola; Tapio Salakoski (ICDM Workshops, 2011)

A Parallel Online Regularized Least-squares Machine Learning Algorithm for Future Multi-core Processors. - Tapio Pahikkala; Antti Airola; Thomas Canhao Xu; Pasi Liljeberg; Hannu Tenhunen; Tapio Salakoski (PECCS, 2011)

Learning Multi-Label Predictors under Sparsity Budget. - Pekka Naula; Tapio Pahikkala; Antti Airola; Tapio Salakoski (SCAI, 2011)

U-Compare bio-event meta-service: compatible BioNLP event extraction services. - Yoshinobu Kano; Jari Björne; Filip Ginter; Tapio Salakoski; Ekaterina Buyko; Udo Hahn; K. Bretonnel Cohen; Karin Verspoor; Christophe Roeder; Lawrence E. Hunter; Halil Kilicoglu; Sabine Bergler; et al. (BMC Bioinform., 2011)

Extracting Contextualized Complex Biological Events with Rich Graph-Based Feature Sets. - Jari Björne; Juho Heimonen; Filip Ginter; Antti Airola; Tapio Pahikkala; Tapio Salakoski (Comput. Intell., 2011)

An experimental comparison of cross-validation techniques for estimating the area under the ROC curve. - Antti Airola; Tapio Pahikkala; Willem Waegeman; Bernard De Baets; Tapio Salakoski (Comput. Stat. Data Anal., 2011)

On Learning and Cross-Validation with Decomposed Nyström Approximation of Kernel Matrix. - Antti Airola; Tapio Pahikkala; Tapio Salakoski (Neural Process. Lett., 2011)

Training linear ranking SVMs in linearithmic time using red-black trees. - Antti Airola; Tapio Pahikkala; Tapio Salakoski (Pattern Recognit. Lett., 2011)

PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations. - Jari Björne; Sofie Van Landeghem; Sampo Pyysalo; Tomoko Ohta; Filip Ginter; Yves Van de Peer; Sophia Ananiadou; Tapio Salakoski (BioNLP@HLT-NAACL, 2012)

An Ontology to Improve Accessibility and Quality of Patient Instructions. - Juho Heimonen; Tapio Salakoski; Sanna Salanterä (CLEF (Online Working Notes/Labs/Workshop), 2012)

Vocabulary In Discharge Documents The Patient's Perspective. - Veronika Laippala; Riitta Danielsson-Ojala; Heljä Lundgrén-Laine; Sanna Salanterä; Tapio Salakoski (CLEF (Online Working Notes/Labs/Workshop), 2012)

Implementation and Analysis of Block Dense Matrix Decomposition on Network-on-Chips. - Thomas Canhao Xu; Tapio Pahikkala; Antti Airola; Pasi Liljeberg; Juha Plosila; Tapio Salakoski; Hannu Tenhunen (HPCC-ICESS, 2012)

Breaking the Programming Language Barrier: Using Program Visualizations to Transfer Programming Knowledge in One Programming Language to Another. - Johannes Holvitie; Teemu Rajala; Riku Haavisto; Erkki Kaila; Mikko-Jussi Laakso; Tapio Salakoski (ICALT, 2012)

Computer-assisted learning in primary school mathematics using ViLLE education tool. - Einari Kurvinen; Rolf Lindén; Teemu Rajala; Erkki Kaila; Mikko-Jussi Laakso; Tapio Salakoski (Koli Calling, 2012)

VirTu: virtual tutoring environment. - Teemu Mäntyharju; Tapio Salakoski; Matti Koivula; Mikko-Jussi Laakso (Koli Calling, 2012)

Parallel Feature Selection for Regularized Least-Squares. - Sebastian Okser; Antti Airola; Tero Aittokallio; Tapio Salakoski; Tapio Pahikkala (PARA, 2012)

Avoiding Hazards - What Can Health Care Learn from Aviation? - Olli Sjöblom; Juho Heimonen; Lotta Kauhanen; Veronika Laippala; Heljä Lundgrén-Laine; Laura-Maria Murtola; Tapio Salakoski; Sanna Salanterä (WIS, 2012)

Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations. - Sofie Van Landeghem; Kai Hakala; Samuel Rönnqvist; Tapio Salakoski; Yves Van de Peer; Filip Ginter (Adv. Bioinformatics, 2012)

Wrapper-based selection of genetic features in genome-wide association studies through fast matrix operations. - Tapio Pahikkala; Sebastian Okser; Antti Airola; Tapio Salakoski; Tero Aittokallio (Algorithms Mol. Biol., 2012)

University of Turku in the BioNLP'11 Shared Task. - Jari Björne; Filip Ginter; Tapio Salakoski (BMC Bioinform., 2012)

Semantically linking molecular entities in literature through entity relationships. - Sofie Van Landeghem; Jari Björne; Thomas Abeel; Bernard De Baets; Tapio Salakoski; Yves Van de Peer (BMC Bioinform., 2012)

Parallelized Online Regularized Least-Squares for Adaptive Embedded Systems. - Tapio Pahikkala; Antti Airola; Thomas Canhao Xu; Pasi Liljeberg; Hannu Tenhunen; Tapio Salakoski (Int. J. Embed. Real Time Commun. Syst., 2012)

A Kernel-Based Framework for Learning Graded Relations From Data. - Willem Waegeman; Tapio Pahikkala; Antti Airola; Tapio Salakoski; Michiel Stock; Bernard De Baets (IEEE Trans. Fuzzy Syst., 2012)

TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task. - Jari Björne; Tapio Salakoski (BioNLP@ACL (Shared Task), 2013)

EVEX in ST'13: Application of a large-scale text mining resource to event extraction and network construction. - Kai Hakala; Sofie Van Landeghem; Tapio Salakoski; Yves Van de Peer; Filip Ginter (BioNLP@ACL (Shared Task), 2013)

Using Text Mining to Explore Factors Associated with Acute Confusion in Cardiac Patients Documentation. - Laura-Maria Murtola; Lotta Kauhanen; Hans Moen; Heljä Lundgrén-Laine; Tapio Salakoski; Sanna Salanterä (CLEF (Working Notes), 2013)

Predicting Conjunct Propagation and Other Extended Stanford Dependencies. - Jenna Nyblom; Samuel Kohonen; Katri Haverinen; Tapio Salakoski; Filip Ginter (DepLing, 2013)

Building a Large Automatically Parsed Corpus of Finnish. - Filip Ginter; Jenna Nyblom; Veronika Laippala; Samuel Kohonen; Katri Haverinen; Simo Vihjanen; Tapio Salakoski (NODALIDA, 2013)

Towards a Dependency-based PropBank of General Finnish. - Katri Haverinen; Veronika Laippala; Samuel Kohonen; Anna Missilä; Jenna Nyblom; Stina Ojala; Timo Viljanen; Tapio Salakoski; Filip Ginter (NODALIDA, 2013)

UTurku: Drug Named Entity Recognition and Drug-Drug Interaction Extraction Using SVM Classification and Domain Knowledge. - Jari Björne; Suwisa Kaewphan; Tapio Salakoski (SemEval@NAACL-HLT, 2013)

Using cluster analysis to identify weak signals of lethal trends in aviation and healthcare documentation. - Olli Sjöblom; Laura-Maria Murtola; Juho Heimonen; Lotta Kauhanen; Veronika Laippala; Heljä Lundgrén-Laine; Tapio Salakoski; Sanna Salanterä (Int. J. Netw. Virtual Organisations, 2013)

Care Episode Retrieval. - Hans Moen; Erwin Marsi; Filip Ginter; Laura-Maria Murtola; Tapio Salakoski; Sanna Salanterä (Louhi@EACL, 2014)

Can IT health-care applications improve the medication tray-filling process at hospital wards? An exploratory study using eye-tracking and stress response. - Natalia Díaz Rodríguez; Johan Lilius; Sebu Björklund; Joachim Majors; Kimmo Rautanen; Riitta Danielsson-Ojala; Hanna Pirinen; Lotta Kauhanen; Sanna Salanterä; Tapio Salakoski; Ilona Tuominen (Healthcom, 2014)

Automatic assessment and immediate feedback in first grade mathematics. - Einari Kurvinen; Rolf Lindén; Teemu Rajala; Erkki Kaila; Mikko-Jussi Laakso; Tapio Salakoski (Koli Calling, 2014)

On Evaluation of Automatically Generated Clinical Discharge Summaries. - Hans Moen; Juho Heimonen; Laura-Maria Murtola; Antti Airola; Tapio Pahikkala; Virpi Terävä; Riitta Danielsson-Ojala; Tapio Salakoski; Sanna Salanterä (PAHI, 2014)

Properties of Object-Level Cross-Validation Schemes for Symmetric Pair-Input Data. - Juho Heimonen; Tapio Salakoski; Tapio Pahikkala (S+SSPR, 2014)

Documentation of the Clinical Phase of the Cardiac Rehabilitation Process in a Finnish University Hospital District. - Lotta Kauhanen; Laura-Maria Murtola; Juho Heimonen; Tuija Leskinen; Kari Kalliokoski; Elina Raivo; Tapio Salakoski; Sanna Salanterä (WIS, 2014)

Statistical parsing of varieties of clinical Finnish. - Veronika Laippala; Timo Viljanen; Antti Airola; Jenna Kanerva; Sanna Salanterä; Tapio Salakoski; Filip Ginter (Artif. Intell. Medicine, 2014)

Predicting patient acuity from electronic patient records. - Elina Kontio; Antti Airola; Tapio Pahikkala; Heljä Lundgrén-Laine; Kristiina Junttila; Heikki Korvenranta; Tapio Salakoski; Sanna Salanterä (J. Biomed. Informatics, 2014)

Building the essential resources for Finnish: the Turku Dependency Treebank. - Katri Haverinen; Jenna Nyblom; Timo Viljanen; Veronika Laippala; Samuel Kohonen; Anna Missilä; Stina Ojala; Tapio Salakoski; Filip Ginter (Lang. Resour. Evaluation, 2014)

Multi-label learning under feature extraction budgets. - Pekka Naula; Antti Airola; Tapio Salakoski; Tapio Pahikkala (Pattern Recognit. Lett., 2014)

Comparing student performance between traditional and technologically enhanced programming course. - Erkki Kaila; Teemu Rajala; Mikko-Jussi Laakso; Rolf Lindén; Einari Kurvinen; Ville Karavirta; Tapio Salakoski (ACE, 2015)

Learning Low Cost Multi-target Models by Enforcing Sparsity. - Pekka Naula; Antti Airola; Tapio Salakoski; Tapio Pahikkala (IEA/AIE, 2015)

Interactive Learning Content for Introductory Computer Science Course Using the ViLLE Exercise Framework. - Ville Karavirta; Riku Haavisto; Erkki Kaila; Mikko-Jussi Laakso; Teemu Rajala; Tapio Salakoski (LaTiCE, 2015)

Towards the Classification of the Finnish Internet Parsebank: Detecting Translations and Informality. - Veronika Laippala; Jenna Kanerva; Anna Missilä; Sampo Pyysalo; Tapio Salakoski; Filip Ginter (NODALIDA, 2015)

On study habits on an introductory course on programming. - Salla Willman; Rolf Lindén; Erkki Kaila; Teemu Rajala; Mikko-Jussi Laakso; Tapio Salakoski (Comput. Sci. Educ., 2015)

Care episode retrieval: distributional semantic models for information retrieval in the clinical domain. - Hans Moen; Filip Ginter; Erwin Marsi; Laura-Maria Peltonen; Tapio Salakoski; Sanna Salanterä (BMC Medical Informatics Decis. Mak., 2015)

Smart Dosing: A mobile application for tracking the medication tray-filling and dispensation processes in hospital wards. - N. A. Khan; Natalia Díaz Rodríguez; Riitta Danielsson-Ojala; Hanna Pirinen; Lotta Kauhanen; Sanna Salanterä; Joachim Majors; Sebu Björklund; Kimmo Rautanen; Tapio Salakoski; Ilona Tuominen; Ivan Porres; et al. (Recent Advances in Ambient Assisted Living, 2015)

TEES 2.2: Biomedical Event Extraction for Diverse Corpora. - Jari Björne; Tapio Salakoski (BMC Bioinform., 2015)

Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis. - Kai Hakala; Sofie Van Landeghem; Tapio Salakoski; Yves Van de Peer; Filip Ginter (BMC Bioinform., 2015)

Automatically assessed electronic exams in programming courses. - Teemu Rajala; Erkki Kaila; Rolf Lindén; Einari Kurvinen; Erno Lokkila; Mikko-Jussi Laakso; Tapio Salakoski (ACSW, 2016)

Syntactic analyses and named entity recognition for PubMed and PubMed Central - up-to-the-minute. - Kai Hakala; Suwisa Kaewphan; Tapio Salakoski; Filip Ginter (BioNLP@ACL, 2016)

Deep Learning with Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016. - Farrokh Mehryary; Jari Björne; Sampo Pyysalo; Tapio Salakoski; Filip Ginter (BioNLP (Shared Task), 2016)

Programming Misconceptions in an Introductory Level Programming Course Exam. - Einari Kurvinen; Niko Hellgren; Erkki Kaila; Mikko-Jussi Laakso; Tapio Salakoski (ITiCSE, 2016)

Medical warning system based on Internet of Things using fog computing. - Iman Azimi; Arman Anzanpour; Amir M. Rahmani; Pasi Liljeberg; Tapio Salakoski (IWBIS, 2016)

UTU at SemEval-2016 Task 10: Binary Classification for Expression Detection (BCED). - Jari Björne; Tapio Salakoski (SemEval@NAACL-HLT, 2016)

Factors Affecting the Availability of Electronic Patient Records for Secondary Purposes - A Case Study. - Antti Vikström; Sanaz Rahimi Moosavi; Hans Moen; Tapio Salakoski; Sanna Salanterä (WIS, 2016)

Comparison of automatic summarisation methods for clinical free text notes. - Hans Moen; Laura-Maria Peltonen; Juho Heimonen; Antti Airola; Tapio Pahikkala; Tapio Salakoski; Sanna Salanterä (Artif. Intell. Medicine, 2016)

Ensemble of Convolutional Neural Networks for Medicine Intake Recognition in Twitter. - Kai Hakala; Farrokh Mehryary; Hans Moen; Suwisa Kaewphan; Tapio Salakoski; Filip Ginter (SMM4H@AMIA, 2017)

End-to-End System for Bacteria Habitat Extraction. - Farrokh Mehryary; Kai Hakala; Suwisa Kaewphan; Jari Björne; Tapio Salakoski; Filip Ginter (BioNLP, 2017)

Detecting mentions of pain and acute confusion in Finnish clinical text. - Hans Moen; Kai Hakala; Farrokh Mehryary; Laura-Maria Peltonen; Tapio Salakoski; Filip Ginter; Sanna Salanterä (BioNLP, 2017)

Applying BLAST to Text Reuse Detection in Finnish Newspapers and Journals, 1771-1910. - Aleksi Vesanto; Asko Nivala; Heli Rantala; Tapio Salakoski; Hannu Salmi; Filip Ginter (ListLang@NoDaLiDa, 2017)

Creating register sub-corpora for the Finnish Internet Parsebank. - Veronika Laippala; Juhani Luotolahti; Aki-Juhani Kyröläinen; Tapio Salakoski; Filip Ginter (NODALIDA, 2017)

A System for Identifying and Exploring Text Repetition in Large Historical Document Corpora. - Aleksi Vesanto; Filip Ginter; Hannu Salmi; Asko Nivala; Tapio Salakoski (NODALIDA, 2017)

Evaluation of a Prototype System that Automatically Assigns Subject Headings to Nursing Narratives Using Recurrent Neural Network. - Hans Moen; Kai Hakala; Laura-Maria Peltonen; Henry Suhonen; Petri Loukasmäki; Tapio Salakoski; Filip Ginter; Sanna Salanterä (Louhi@EMNLP, 2018)

Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing. - Jari Björne; Tapio Salakoski (BioNLP, 2018)

Turku Neural Parser Pipeline: An End-to-End System for the CoNLL 2018 Shared Task. - Jenna Kanerva; Filip Ginter; Niko Miekka; Akseli Leino; Tapio Salakoski (CoNLL Shared Task (2), 2018)

Improving Layman Readability of Clinical Narratives with Unsupervised Synonym Replacement. - Hans Moen; Laura-Maria Peltonen; Mikko Koivumäki; Henry Suhonen; Tapio Salakoski; Filip Ginter; Sanna Salanterä (MIE, 2018)

Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling. - Suwisa Kaewphan; Kai Hakala; Niko Miekka; Tapio Salakoski; Filip Ginter (Database J. Biol. Databases Curation, 2018)

Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction. - Farrokh Mehryary; Jari Björne; Tapio Salakoski; Filip Ginter (Database J. Biol. Databases Curation, 2018)

Unsupervised Phrase-Level Query Rewriting for Assisting Search in Clinical Free Text. - Hans Moen; Laura-Maria Peltonen; Henry Suhonen; Mikko Koivumäki; Tapio Salakoski; Sanna Salanterä (MedInfo, 2019)

Template-free Data-to-Text Generation of Finnish Sports News. - Jenna Kanerva; Samuel Rönnqvist; Riina Kekki; Tapio Salakoski; Filip Ginter (NODALIDA, 2019)

An Unsupervised Query Rewriting Approach Using N-gram Co-occurrence Statistics to Find Similar Phrases in Large Text Corpora. - Hans Moen; Laura-Maria Peltonen; Henry Suhonen; Hanna-Maria Matinolli; Riitta Mieronkoski; Kirsi Telen; Kirsi Terho; Tapio Salakoski; Sanna Salanterä (NODALIDA, 2019)

Leveraging Text Repetitions and Denoising Autoencoders in OCR Post-correction. - Kai Hakala; Aleksi Vesanto; Niko Miekka; Tapio Salakoski; Filip Ginter (CoRR, 2019)

Is Multilingual BERT Fluent in Language Generation? - Samuel Rönnqvist; Jenna Kanerva; Tapio Salakoski; Filip Ginter (CoRR, 2019)

Multilingual is not enough: BERT for Finnish. - Antti Virtanen; Jenna Kanerva; Rami Ilo; Jouni Luoma; Juhani Luotolahti; Tapio Salakoski; Filip Ginter; Sampo Pyysalo (CoRR, 2019)

Entity-Pair Embeddings for Improving Relation Extraction in the Biomedical Domain. - Farrokh Mehryary; Hans Moen; Tapio Salakoski; Filip Ginter (ESANN, 2020)

Propagating AI Knowledge Across University Disciplines- The Design of A Multidisciplinary AI Study Module. - Samuli Laato; Henna Vilppu; Juho Heimonen; Antti Hakkala; Jari Björne; Ali Farooq 001; Tapio Salakoski; Antti Airola (FIE, 2020)

Using early assessment performance as early warning signs to identify at-risk students in programming courses. - Ashok Kumar Veerasamy; Daryl J. D'Souza; Mikko-Ville Apiola; Mikko-Jussi Laakso; Tapio Salakoski (FIE, 2020)

Assisting nurses in care documentation: from automated sentence classification to coherent document structures with subject headings. - Hans Moen; Kai Hakala; Laura-Maria Peltonen; Hanna-Maria Matinolli; Henry Suhonen; Kirsi Terho; Riitta Danielsson-Ojala; Maija Valta; Filip Ginter; Tapio Salakoski; Sanna Salanterä (J. Biomed. Semant., 2020)

Long Term Effects on Technology Enhanced Learning: The Use of Weekly Digital Lessons in Mathematics. - Einari Kurvinen; Erkki Kaila; Mikko-Jussi Laakso; Tapio Salakoski (Informatics Educ., 2020)

Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods. - Hans Moen; Kai Hakala; Laura-Maria Peltonen; Henry Suhonen; Filip Ginter; Tapio Salakoski; Sanna Salanterä (J. Am. Medical Informatics Assoc., 2020)

Text Classification Model Explainability for Keyword Extraction - Towards Keyword-Based Summarization of Nursing Care Episodes. - Akseli Reunamo; Laura-Maria Peltonen; Reetta Mustonen; Minttu Saari; Tapio Salakoski; Sanna Salanterä; Hans Moen (MedInfo, 2021)

Predictive Models as Early Warning Systems: A Bayesian Classification Model to Identify At-Risk Students of Programming. - Ashok Kumar Veerasamy; Mikko-Jussi Laakso; Daryl J. D'Souza; Tapio Salakoski (SAI (2), 2021)

Universal Lemmatizer: A sequence-to-sequence model for lemmatizing Universal Dependencies treebanks. - Jenna Kanerva; Filip Ginter; Tapio Salakoski (Nat. Lang. Eng., 2021)

Clustering Nursing Sentences - Comparing Three Sentence Embedding Methods. - Hans Moen; Henry Suhonen; Sanna Salanterä; Tapio Salakoski; Laura-Maria Peltonen (MIE, 2022)

Neural Network and Random Forest Models in Protein Function Prediction. - Kai Hakala; Suwisa Kaewphan; Jari Björne; Farrokh Mehryary; Hans Moen; Martti Tolvanen; Tapio Salakoski; Filip Ginter (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Computing Education Research in Finland. - Lauri Malmi; Arto Hellas; Petri Ihantola; Ville Isomöttönen; Ilkka Jormanainen; Terhi Kilamo; Antti Knutas; Ari Korhonen; Mikko-Jussi Laakso; Sonsoles López-Pernas; Timo Poranen; Tapio Salakoski; et al. (Past, Present and Future of Computing Education Research, 2023)