A support vector machine approach to identification of proteins relevant to learning in a mouse model of Down Syndrome. - Tara Eicher; Kaushik Sinha (IJCNN, 2017)

Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge. - Tara Eicher; Andrew Patt; Esko Kautto; Raghu Machiraju; Ewy A. Mathé; Yan Zhang (BMC Bioinform., 2019)

Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements. - Tara Eicher; Jany Chan; Han Luu; Raghu Machiraju; Ewy A. Mathé (BMC Bioinform., 2021)

RaMP-DB 2.0: a renovated knowledgebase for deriving biological and chemical insight from metabolites, proteins, and genes. - John C. Braisted; Andrew Patt; Cole Tindall; Timothy Sheils; Jorge Neyra; Kyle Spencer; Tara Eicher; Ewy A. Mathé (Bioinform., 2023)