Functional characterization of miRNAs in prostate cancer using functional protein networks. - Mohammed Al-Shalalfa; Ala Qabaja; Tarek A. Bismar; Reda Alhajj (CIBCB, 2012)

Detecting Cancer Outlier Genes with Potential Rearrangement Using Gene Expression Data and Biological Networks. - Mohammed Al-Shalalfa; Tarek A. Bismar; Reda Alhajj (Adv. Bioinformatics, 2012)

Protein network-based Lasso regression model for the construction of disease-miRNA functional interactions. - Ala Qabaja; Mohammed Al-Shalalfa; Tarek A. Bismar; Reda Alhajj (EURASIP J. Bioinform. Syst. Biol., 2013)

Exploring Gene Expression and Clinical Data for Identifying Prostate Cancer Severity Levels using Machine Learning Methods. - Ahmed Al Marouf; Reda Alhajj; Jon G. Rokne; Sunita Ghose; Tarek A. Bismar (CCECE, 2023)

Attention-Enhanced UNet for Automated Gleason Score 3 Tumor Segmentation in Histopathological Whole Slide Images. - Biniyam Mezgebo; Joema Lima; Abdoljalil Addeh; Yousif Al-Khoury; Wooju Chung; Tarek A. Bismar; M. Ethan MacDonald; Dylan R. Pillai (ISBI, 2025)

BioLake: an RNA expression analysis framework for prostate cancer biomarker powered by data lakehouse. - Qiaowang Li; Yaser Gamallat; Jon G. Rokne; Tarek A. Bismar; Reda Alhajj (BMC Bioinform., 2025)