SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences. - Mohammed Monzoorul Haque; Tarini Shankar Ghosh; Dinakar Komanduri; Sharmila S. Mande (Bioinform., 2009)

DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences. - Tarini Shankar Ghosh; Monzoorul Haque Mohammed; Sharmila S. Mande (BMC Bioinform., 2010)

SPHINX - an algorithm for taxonomic binning of metagenomic sequences. - Monzoorul Haque Mohammed; Tarini Shankar Ghosh; Nitin Kumar Singh; Sharmila S. Mande (Bioinform., 2011)

HabiSign: a novel approach for comparison of metagenomes and rapid identification of habitat-specific sequences. - Tarini Shankar Ghosh; Monzoorul Haque Mohammed; Hannah Rajasingh; Sudha Chadaram; Sharmila S. Mande (BMC Bioinform., 2011)

Classification of metagenomic sequences: methods and challenges. - Sharmila S. Mande; Monzoorul Haque Mohammed; Tarini Shankar Ghosh (Briefings Bioinform., 2012)

Grid-Assembly: An oligonucleotide composition-based partitioning strategy to aid metagenomic sequence assembly. - Tarini Shankar Ghosh; Varun Mehra; Sharmila S. Mande (J. Bioinform. Comput. Biol., 2015)

IPCO: Inference of Pathways from Co-variance analysis. - Mrinmoy Das; Tarini Shankar Ghosh; Ian B. Jeffery (BMC Bioinform., 2020)