Learning gene regulatory networks from gene expression measurements using non-parametric molecular kinetics. - Tarmo Äijö; Harri Lähdesmäki (Bioinform., 2009)

Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images. - Pekka Ruusuvuori; Tarmo Äijö; Sharif Chowdhury; Cecilia Garmendia-Torres; Jyrki Selinummi; Mirko Birbaumer; Aimée M. Dudley; Lucas Pelkmans; Olli Yli-Harja (BMC Bioinform., 2010)

Sorad: a systems biology approach to predict and modulate dynamic signaling pathway response from phosphoproteome time-course measurements. - Tarmo Äijö; Kirsi Granberg; Harri Lähdesmäki (Bioinform., 2013)

Methods for time series analysis of RNA-seq data with application to human Th17 cell differentiation. - Tarmo Äijö; Vincent Butty; Zhi Jane Chen; Verna Salo; Subhash Tripathi; Christopher B. Burge; Riitta Lahesmaa; Harri Lähdesmäki (Bioinform., 2014)

LuxGLM: a probabilistic covariate model for quantification of DNA methylation modifications with complex experimental designs. - Tarmo Äijö; Xiaojing Yue; Anjana Rao; Harri Lähdesmäki (Bioinform., 2016)

Temporal probabilistic modeling of bacterial compositions derived from 16S rRNA sequencing. - Tarmo Äijö; Christian L. Müller; Richard Bonneau (Bioinform., 2018)