Accurate Assembly of Circular RNAs with TERRACE. - Tasfia Zahin; Qian Shi 006; Xiaofei Carl Zang; Mingfu Shao (RECOMB, 2024)

Accurate Detection of Tandem Repeats from Error-Prone Sequences with EquiRep. - Zhezheng Song; Tasfia Zahin; Xiang Li; Mingfu Shao (RECOMB, 2025)

An alignment-free method for phylogeny estimation using maximum likelihood. - Tasfia Zahin; Md. Hasin Abrar; Mizanur Rahman Jewel; Tahrina Tasnim; Md. Shamsuzzoha Bayzid; Atif Rahman 001 (BMC Bioinform., 2025)