Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data. - Valentina Boeva; Tatiana G. Popova; Kevin Bleakley; Pierre Chiche; Julie Cappo; Gudrun Schleiermacher; Isabelle Janoueix-Lerosey; Olivier Delattre; Emmanuel Barillot (Bioinform., 2012)

Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data. - Valentina Boeva; Tatiana G. Popova; Maxime Lienard; Sebastien Toffoli; Maud Kamal; Christophe Le Tourneau; David Gentien; Nicolas Servant; Pierre Gestraud; Thomas Rio Frio; Philippe Hupé; Emmanuel Barillot; et al. (Bioinform., 2014)

Matching Confidence Masks with Experts Annotations for Estimates of Chromosomal Copy Number Alterations. - Jorge Muñoz-Minjares; Yuriy S. Shmaliy; Tatiana G. Popova; R. J. Perez-Chimal (IWBBIO (2), 2018)

Comparison between CNA Estimators and WGS technology based on the Refinement of Breakpoints using the Confidence Masks. - Jorge Muñoz-Minjares; Yuriy S. Shmaliy; Tatiana G. Popova; Janette Perez-Chimal; Jose Lopez-Robles; Misael Lopez-Ramirez (CCE, 2019)

Correcting estimates of DNA CNAs using improved confidence masks tuned to gold standard. - Jorge Muñoz-Minjares; Yuriy S. Shmaliy; Tatiana G. Popova (IET Signal Process., 2019)

ShallowHRD: detection of homologous recombination deficiency from shallow whole genome sequencing. - Alexandre Eeckhoutte; Alexandre Houy; Elodie Manié; Manon Reverdy; Ivan Bièche; Elisabetta Marangoni; Oumou Goundiam; Anne Vincent-Salomon; Dominique Stoppa-Lyonnet; François-Clément Bidard; Marc-Henri Stern; Tatiana G. Popova (Bioinform., 2020)

Critical evaluation of CNA estimators for DNA data using matching confidence masks and WGS technology. - Jorge Ulises Muñoz-Minjares; Yuriy S. Shmaliy; Tatiana G. Popova (Biomed. Signal Process. Control., 2021)