SVM-dependent pairwise HMM: an application to protein pairwise alignments. - Gabriele Orlando; Daniele Raimondi; Taushif Khan; Tom Lenaerts; Wim F. Vranken (Bioinform., 2017)

ProLego: tool for extracting and visualizing topological modules in protein structures. - Taushif Khan; Shailesh Kumar Panday; Indira Ghosh (BMC Bioinform., 2018)

Lexicon Visualization Library and JavaScript for Scientific Data Visualization. - Ibrahim Tanyalcin; Carla Al Assaf; Julien Ferté; François Ancien; Taushif Khan; Guillaume Smits; Marianne Rooman; Wim F. Vranken (Comput. Sci. Eng., 2018)