Mathematical modelling for the study of respiratory mechanics. - Taxiarchis Botsis; John Mantas (MIE, 2003)

Implementation of a Computerized System in an Oncology Unit. - Taxiarchis Botsis; Konstantinos Syrigos (Int. J. Heal. Inf. Syst. Informatics, 2007)

Automatic detection of clustered microcalcifications in digital mammograms using mathematical morphology and neural networks. - Stelios Halkiotis; Taxiarchis Botsis; Maria Rangoussi (Signal Process., 2007)

Electronic Disease Surveillance for Sensitive Population Groups - The Diabetics Case Study. - Taxiarchis Botsis; Ole K. Hejlesen; Johan Gustav Bellika; Gunnar Hartvigsen (MIE, 2008)

Implementation of a Computerized System in an Oncology Unit. - Taxiarchis Botsis; Konstantinos Syrigos (Database Technologies: Concepts, Methodologies, Tools, and Applications, 2009)

New Directions in Electronic Disease Surveillance: Detection of Infectious Diseases during the Incubation Period. - Taxiarchis Botsis; Johan Gustav Bellika; Gunnar Hartvigsen (eTELEMED, 2009)

Exploring new directions in disease surveillance for people with diabetes: Lessons learned and future plans. - Taxiarchis Botsis; Gunnar Hartvigsen (MedInfo, 2010)

Sixteen years of ICPC use in Norwegian primary care: looking through the facts. - Taxiarchis Botsis; Carl-Fredrik Bassøe; Gunnar Hartvigsen (BMC Medical Informatics Decis. Mak., 2010)

Network Analysis of Possible Anaphylaxis Cases Reported to the US Vaccine Adverse Event Reporting System after H1N1 Influenza Vaccine. - Taxiarchis Botsis; Robert Ball (MIE, 2011)

Text mining for the Vaccine Adverse Event Reporting System: medical text classification using informative feature selection. - Taxiarchis Botsis; Michael D. Nguyen; Emily Jane Woo; Marianthi Markatou; Robert Ball (J. Am. Medical Informatics Assoc., 2011)

Proof of concept for the role of glycemic control in the early detection of infections in diabetics. - Taxiarchis Botsis; Albert M. Lai; George Hripcsak; Walter Palmas; Justin B. Starren; Gunnar Hartvigsen (Health Informatics J., 2012)

Vaccine adverse event text mining system for extracting features from vaccine safety reports. - Taxiarchis Botsis; Thomas Buttolph; Michael D. Nguyen; Scott Winiecki; Emily Jane Woo; Robert Ball (J. Am. Medical Informatics Assoc., 2012)

Novel Algorithms for Improved Pattern Recognition Using the US FDA Adverse Event Network Analyzer. - Taxiarchis Botsis; John Scott; Ravi Goud; Pamela Toman; Andrea Sutherland; Robert Ball (MIE, 2014)

Identifying Similar Cases in Document Networks Using Cross-Reference Structures. - Taxiarchis Botsis; John Scott; Emily Jane Woo; Robert Ball (IEEE J. Biomed. Health Informatics, 2015)

Use of data mining at the Food and Drug Administration. - Hesha J. Duggirala; Joseph M. Tonning; Ella Smith; Roselie A. Bright; John D. Baker; Robert Ball; Carlos Bell; Susan J. Bright-Ponte; Taxiarchis Botsis; Khaled Bouri; Marc Boyer; Keith Burkhart; et al. (J. Am. Medical Informatics Assoc., 2016)

Decision support environment for medical product safety surveillance. - Taxiarchis Botsis; Christopher Jankosky; Deepa Arya; Kory Kreimeyer; Matthew Foster; Abhishek Pandey; Wei Wang 249; Guangfan Zhang; Richard Forshee; Ravi Goud; David Menschik; Mark Walderhaug; et al. (J. Biomed. Informatics, 2016)

A new algorithmic approach for the extraction of temporal associations from clinical narratives with an application to medical product safety surveillance reports. - Wei Wang 249; Kory Kreimeyer; Emily Jane Woo; Robert Ball; Matthew Foster; Abhishek Pandey; John Scott; Taxiarchis Botsis (J. Biomed. Informatics, 2016)

Monitoring biomedical literature for post-market safety purposes by analyzing networks of text-based coded information. - Taxiarchis Botsis; Matthew Foster; Kory Kreimeyer; Abhishek Pandey; Richard Forshee (CRI, 2017)

An Early Infectious Disease Outbreak Detection Mechanism Based on Self-Recorded Data from People with Diabetes. - Ashenafi Zebene Woldaregay; Eirik Årsand; Taxiarchis Botsis; Gunnar Hartvigsen (MedInfo, 2017)

Application of Natural Language Processing and Network Analysis Techniques to Post-market Reports for the Evaluation of Dose-related Anti-Thymocyte Globulin Safety Patterns. - Taxiarchis Botsis; Matthew Foster; Nina Arya; Kory Kreimeyer; Abhishek Pandey; Deepa Arya (Appl. Clin. Inform., 2017)

Natural language processing systems for capturing and standardizing unstructured clinical information: A systematic review. - Kory Kreimeyer; Matthew Foster; Abhishek Pandey; Nina Arya; Gwendolyn Halford; Sandra F. Jones; Richard Forshee; Mark Walderhaug; Taxiarchis Botsis (J. Biomed. Informatics, 2017)

Evaluation of Natural Language Processing (NLP) systems to annotate drug product labeling with MedDRA terminology. - Thomas Ly; Carol A. Pamer; Oanh Dang; Sonja Brajovic; Shahrukh Haider; Taxiarchis Botsis; David Milward; Andrew Winter; Susan Lu; Robert Ball (J. Biomed. Informatics, 2018)

Data-driven modeling and prediction of blood glucose dynamics: Machine learning applications in type 1 diabetes. - Ashenafi Zebene Woldaregay; Eirik Årsand; Ståle Walderhaug; David J. Albers; Lena Mamykina; Taxiarchis Botsis; Gunnar Hartvigsen (Artif. Intell. Medicine, 2019)

Adverse Event extraction from Structured Product Labels using the Event-based Text-mining of Health Electronic Records (ETHER) system. - Abhishek Pandey; Kory Kreimeyer; Matthew Foster; Oanh Dang; Thomas Ly; Wei Wang 249; Richard Forshee; Taxiarchis Botsis (Health Informatics J., 2019)

Visual storytelling enhances knowledge dissemination in biomedical science. - Taxiarchis Botsis; Jennifer E. Fairman; Meghan Bridgid Moran; Valsamo Anagnostou (J. Biomed. Informatics, 2020)

Discovering Drug-Drug Associations in the FDA Adverse Event Reporting System Database with Data Mining Approaches. - Weizhong Zhao; Huyen Le; James J. Chen; Hesha J. Duggirala; Richard Forshee; Taxiarchis Botsis; Henry Francis; Huixiao Hong; Weida Tong; Yi-Ting Hwang; Wen Zou (BIBM, 2021)

An Evaluation of Pretrained BERT Models for Comparing Semantic Similarity Across Unstructured Clinical Trial Texts. - Jessica Patricoski; Kory Kreimeyer; Archana Balan; Kent Hardart; Jessica Tao; Valsamo Anagnostou; Taxiarchis Botsis (ICIMTH, 2021)

Can FHIR Support Standardization in Post-Market Safety Surveillance? - Xingtong Wang; Harold P. Lehmann; Taxiarchis Botsis (MIE, 2021)

Feature engineering and machine learning for causality assessment in pharmacovigilance: Lessons learned from application to the FDA Adverse Event Reporting System. - Kory Kreimeyer; Oanh Dang; Jonathan Spiker; Monica A. Muñoz; Gary Rosner; Robert Ball; Taxiarchis Botsis (Comput. Biol. Medicine, 2021)

Natural Language Processing Approaches for Retrieval of Clinically Relevant Genomic Information in Cancer. - Taxiarchis Botsis; Joseph Murray; Alessandro Leal; Doreen Palsgrove; Wei Wang 249; James R. White; Victor E. Velculescu; Valsamo Anagnostou (ICIMTH, 2022)

Overcoming Major Barriers to Build Efficient Decision Support Systems in Pharmacovigilance. - Kory Kreimeyer; Jonathan Spiker; Taxiarchis Botsis (ICIMTH, 2022)

Trends and opportunities in computable clinical phenotyping: A scoping review. - Ting He; Anas Belouali; Jessica Patricoski; Harold P. Lehmann; Robert Ball; Valsamo Anagnostou; Kory Kreimeyer; Taxiarchis Botsis (J. Biomed. Informatics, 2023)

A Precision Oncology Platform to Support Genotype-Tailored Therapy Selection. - Taxiarchis Botsis; Jonathan Spiker; Kory Kreimeyer; Maria Fatteh; Jamie Wehr; Mimi Najjar; Jessica Tao; Rena Xian; Nicole L. Imamovic; Ander Pindzola; Adrian Dobs; Jenna V. Canzoniero; et al. (MIE, 2024)

Using Retrieval-Augmented Generation to Capture Molecularly-Driven Treatment Relationships for Precision Oncology. - Kory Kreimeyer; Jenna V. Canzoniero; Maria Fatteh; Valsamo Anagnostou; Taxiarchis Botsis (MIE, 2024)

AI-assisted Knowledge Discovery in Biomedical Literature to Support Decision-making in Precision Oncology. - Ting He; Kory Kreimeyer; Mimi Najjar; Jonathan Spiker; Maria Fatteh; Valsamo Anagnostou; Taxiarchis Botsis (CoRR, 2024)

Deduplicating the FDA adverse event reporting system with a novel application of network-based grouping. - Kory Kreimeyer; Jonathan Spiker; Oanh Dang; Suranjan De; Robert Ball; Taxiarchis Botsis (J. Biomed. Informatics, 2025)