Generalized Markov models of infectious disease spread: A novel framework for developing dynamic health policies. - Reza Yaesoubi; Ted Cohen (Eur. J. Oper. Res., 2011)

Bayesian Estimation of Mixture Models with Prespecified Elements to Compare Drug Resistance in Treatment-Naïve and Experienced Tuberculosis Cases. - Alane Izu; Ted Cohen; Victor DeGruttola (PLoS Comput. Biol., 2013)

How the Dynamics and Structure of Sexual Contact Networks Shape Pathogen Phylogenies. - Katy Robinson; Nick Fyson; Ted Cohen; Christophe Fraser; Caroline Colijn (PLoS Comput. Biol., 2013)

ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis Infections. - Leonid Chindelevitch; Caroline Colijn; Prashini Moodley; Douglas Wilson; Ted Cohen (PLoS Comput. Biol., 2016)

Using Chemical Reaction Kinetics to Predict Optimal Antibiotic Treatment Strategies. - Pia Abel zur Wiesch; Fabrizio Clarelli; Ted Cohen (PLoS Comput. Biol., 2017)

A Likelihood Approach for Real-Time Calibration of Stochastic Compartmental Epidemic Models. - Christoph Zimmer; Reza Yaesoubi; Ted Cohen (PLoS Comput. Biol., 2017)

Drug-target binding quantitatively predicts optimal antibiotic dose levels in quinolones. - Fabrizio Clarelli; Adam Palmer; Bhupender Singh; Merete Storflor; Silje Lauksund; Ted Cohen; Sören Abel; Pia Abel zur Wiesch (PLoS Comput. Biol., 2020)

Tracking and predicting U.S. influenza activity with a real-time surveillance network. - Sequoia I. Leuba; Reza Yaesoubi; Marina Antillon; Ted Cohen; Christoph Zimmer (PLoS Comput. Biol., 2020)

Protective impacts of household-based tuberculosis contact tracing are robust across endemic incidence levels and community contact patterns. - Joshua Havumaki; Ted Cohen; Chengwei Zhai; Joel C. Miller; Seth D. Guikema; Marisa C. Eisenberg; Jon Zelner (PLoS Comput. Biol., 2021)

vCOMBAT: a novel tool to create and visualize a computational model of bacterial antibiotic target-binding. - Vi Ngoc-Nha Tran; Alireza Shams; Sinan Ascioglu; Antal Martinecz; Jingyi Liang; Fabrizio Clarelli; Rafal Mostowy; Ted Cohen; Pia Abel zur Wiesch (BMC Bioinform., 2022)

Reconstructing the course of the COVID-19 epidemic over 2020 for US states and counties: Results of a Bayesian evidence synthesis model. - Melanie H. Chitwood; Marcus Russi; Kenneth Gunasekera; Joshua Havumaki; Fayette Klaassen; Virginia E. Pitzer; Joshua A. Salomon; Nicole A. Swartwood; Joshua L. Warren; Daniel M. Weinberger; Ted Cohen; Nicolas A. Menzies (PLoS Comput. Biol., 2022)

Evaluating spatially adaptive guidelines for the treatment of gonorrhea to reduce the incidence of gonococcal infection and increase the effective lifespan of antibiotics. - Reza Yaesoubi; Ted Cohen; Katherine Hsu; Thomas L. Gift; Sancta B. St. Cyr; Joshua A. Salomon; Yonatan H. Grad (PLoS Comput. Biol., 2022)

Surveillance for TB drug resistance using routine rapid diagnostic testing data: Methodological development and application in Brazil. - Sarah E. Baum; Daniele M. Pelissari; Fernanda Dockhorn Costa; Luiza O. Harada; Mauro Sanchez; Patricia Bartholomay; Ted Cohen; Marcia C. Castro; Nicolas A. Menzies (PLoS Comput. Biol., 2024)