Hammock: a hidden Markov model-based peptide clustering algorithm to identify protein-interaction consensus motifs in large datasets. - Adam Krejci; Ted R. Hupp; Matej Lexa; Borivoj Vojtesek; Petr Müller (Bioinform., 2016)

Discovering Putative Protein Targets of Small Molecules: A Study of the p53 Activator Nutlin. - Minh N. Nguyen; Neeladri Sen; Meiyin Lin; Thomas Leonard Joseph; Candida Vaz; Vivek Tanavde; Luke Way; Ted R. Hupp; Chandra S. Verma 001; M. S. Madhusudhan 001 (J. Chem. Inf. Model., 2019)