Assigning probes into a small number of pools separable by electrophoresis. - Teemu Kivioja; Mikko Arvas; Kari Kataja; Merja Penttilä; Hans Söderlund; Esko Ukkonen (ISMB, 2002)

Hidden Markov Modelling Techniques for Haplotype Analysis. - Mikko Koivisto; Teemu Kivioja; Heikki Mannila; Pasi Rastas; Esko Ukkonen (ALT, 2004)

Finding Missing Patterns. - Shunsuke Inenaga; Teemu Kivioja; Veli Mäkinen (WABI, 2004)

Data integration and visualization system for enabling conceptual biology. - Peddinti V. Gopalacharyulu; Erno Lindfors; Catherine Bounsaythip; Teemu Kivioja; Laxman Yetukuri; Jaakko Hollmén; Matej Oresic (ISMB (Supplement of Bioinformatics), 2005)

Optimization of cDNA-AFLP experiments using genomic sequence data. - Teemu Kivioja; Mikko Arvas; Markku Saloheimo; Merja Penttilä; Esko Ukkonen (Bioinform., 2005)

Missing pattern discovery. - Stanislav Angelov; Shunsuke Inenaga; Teemu Kivioja; Veli Mäkinen (J. Discrete Algorithms, 2011)

PeakXus: comprehensive transcription factor binding site discovery from ChIP-Nexus and ChIP-Exo experiments. - Tuomo Hartonen; Biswajyoti Sahu; Kashyap Dave; Teemu Kivioja; Jussi Taipale (Bioinform., 2016)