On the statistical significance of nucleic acid similarities. - David J. Lipman; W. John Wilbur; Temple F. Smith; Michael S. Waterman (Nucleic Acids Res., 1984)

Algorithms for restriction map comparisons. - Michael S. Waterman; Temple F. Smith; H. L. Katcher (Nucleic Acids Res., 1984)

The molecular biology computer research resource. - Temple F. Smith; K. D. Gruskin; S. Tolman; D. Faulkner (Nucleic Acids Res., 1986)

Molecular genetics and computer analyses. - K. D. Gruskin; Temple F. Smith (Comput. Appl. Biosci., 1987)

Recognition of characteristic patterns in sets of functionally equivalent DNA sequences. - G. Mengeritsky; Temple F. Smith (Comput. Appl. Biosci., 1987)

A modified Chou and Fasman protein structure algorithm. - W. W. Ralph; Teresa A. Webster; Temple F. Smith (Comput. Appl. Biosci., 1987)

ARIADNE: Pattern-Directed Inference and Hierarchical Abstraction in Protein Structure Recognition. - Richard H. Lathrop; Teresa A. Webster; Temple F. Smith (Commun. ACM, 1987)

New analytical tool for analysis of splice site sequence determinants. - G. Mengeritsky; Temple F. Smith (Comput. Appl. Biosci., 1989)

Automatic evaluation of protein sequence functional patterns. - Roderic Guigó; A. Johansson; Temple F. Smith (Comput. Appl. Biosci., 1991)

Massively Parallel Symbolic Induction of Protein Structure/Function Relationships. - Richard H. Lathrop; Teresa A. Webster; Temple F. Smith; Patrick H. Winston (Machine Learning: From Theory to Applications, 1993)

Inferring Correlation Between Database Queries: Analysis of Protein Sequence Patterns. - Roderic Guigó; Temple F. Smith (IEEE Trans. Pattern Anal. Mach. Intell., 1993)

A Branch-and-Bound Algorithm for Optimal Protein Threading with Pairwise (Contact Potential) Amino Acid Interactions. - Richard H. Lathrop; Temple F. Smith (HICSS (5), 1994)

Finite-State and Reduced-Parameter Representations of Protein Backbone Conformations. - Ljubomir J. Buturovic; Temple F. Smith; Sandor Vajda (J. Comput. Chem., 1994)

A Biologically Consistent Model for Comparing Molecular Phylogenies. - Boris G. Mirkin; Ilya B. Muchnik; Temple F. Smith (J. Comput. Biol., 1995)

Exploiting Biology's Rosetta Stone(s). - Temple F. Smith (German Conference on Bioinformatics, 1996)

The threading approach to the inverse protein folding problem. - Temple F. Smith; Loredana Lo Conte; Jadwiga R. Bienkowska; Robert G. Rogers; Chrysanthe Gaitatzes; Richard H. Lathrop (RECOMB, 1997)

Current Limitations to Protein Threading Approaches. - Temple F. Smith; Loredana Lo Conte; Jadwiga R. Bienkowska; Chrysanthe Gaitatzes; Robert G. Rogers; Richard H. Lathrop (J. Comput. Biol., 1997)

Evolutionary Constraint Networks in Ligand-Binding Domains: An Information-Theoretic Approach. - Sylvia B. Nagl; James Freeman; Temple F. Smith (Pacific Symposium on Biocomputing, 1999)

A method for optimal design of a threading scoring function. - Jadwiga R. Bienkowska; Robert G. Rogers; Temple F. Smith (RECOMB, 1999)

Performance of Threading Scoring Functions Designed Using New Optimization Method. - Jadwiga R. Bienkowska; Robert G. Rogers; Temple F. Smith (J. Comput. Biol., 1999)

Positional Statistical Significance in Sequence Alignment. - Lihua Yu; Temple F. Smith (J. Comput. Biol., 1999)

Comprehensive statistical method for protein fold recognition. - Jadwiga R. Bienkowska; Lihua Yu; Sophia Zarakhovich; Robert G. Rogers; Temple F. Smith (RECOMB, 2000)

Automatic Pattern Embedding in Protein Structure Models. - Jadwiga R. Bienkowska; Hongxian He; Temple F. Smith (IEEE Intell. Syst., 2001)

Transcription Factor Map Alignment of Promoter Regions. - Enrique Blanco; Xavier Messeguer; Temple F. Smith; Roderic Guigó (PLoS Comput. Biol., 2006)

Computational Biology: Its Challenges Past, Present, and Future. - Temple F. Smith (RECOMB, 2008)