Detectability of Sequence Homology by DNA Hybridization. - Ralf Bundschuh; Terence Hwa (German Conference on Bioinformatics, 1998)

A Statistical Theory of Sequence Alignment with Gaps. - Dirk Drasdo; Terence Hwa; Michael Lässig (ISMB, 1998)

Optimal detection of sequence similarity by local alignment. - Terence Hwa; Michael Lässig (RECOMB, 1998)

Rapid Assessment of Extremal Statistics for Gapped Local Alignment. - Rolf Olsen; Ralf Bundschuh; Terence Hwa (ISMB, 1999)

Optimizing Smith-Waterman Alignments. - Rolf Olsen; Terence Hwa; Michael Lässig (Pacific Symposium on Biocomputing, 1999)

An analytic study of the phase transition line in local sequence alignment with gaps. - Ralf Bundschuh; Terence Hwa (Discret. Appl. Math., 2000)

Scaling Laws and Similarity Detection in Sequence Alignment with Gaps. - Dirk Drasdo; Terence Hwa; Michael Lässig (J. Comput. Biol., 2000)

Percolation Clustering: A Novel Algorithm Applied to the Clustering of Gene Expression Patterns in Dictyostelium Development. - Roman Sásik; Terence Hwa; N. Iranfar; W. F. Loomis (Pacific Symposium on Biocomputing, 2001)

Statistical Significance of Probabilistic Sequence Alignment and Related Local Hidden Markov Models. - Yi-Kuo Yu; Terence Hwa (J. Comput. Biol., 2001)

Extracting transcriptional events from temporal gene expression patterns during Dictyostelium development. - Roman Sásik; N. Iranfar; Terence Hwa; W. F. Loomis (Bioinform., 2002)

Hybrid alignment: high-performance with universal statistics. - Yi-Kuo Yu; Ralf Bundschuh; Terence Hwa (Bioinform., 2002)

DNA Sequence Evolution with Neighbor-Dependent Mutation. - Peter F. Arndt; Christopher B. Burge; Terence Hwa (J. Comput. Biol., 2003)

Regional and time-resolved mutation patterns of the human genome. - Peter F. Arndt; Terence Hwa (Bioinform., 2004)

Identification and measurement of neighbor-dependent nucleotide substitution processes. - Peter F. Arndt; Terence Hwa (Bioinform., 2005)

Speed, Sensitivity, and Bistability in Auto-activating Signaling Circuits. - Rutger Hermsen; David W. Erickson; Terence Hwa (PLoS Comput. Biol., 2011)

Constrained Allocation Flux Balance Analysis. - Matteo Mori; Terence Hwa; Olivier C. Martin; Andrea De Martino; Enzo Marinari (PLoS Comput. Biol., 2016)

A global resource allocation strategy governs growth transition kinetics of Escherichia coli. - David W. Erickson; Severin J. Schink; Vadim Patsalo; James R. Williamson; Ulrich Gerland; Terence Hwa (Nat., 2017)