3dLOGO: a web server for the identification, analysis and use of conserved protein substructures. - Allegra Via; Daniele Peluso; Pier Federico Gherardini; Emanuele de Rinaldis; Teresa Colombo; Gabriele Ausiello; Manuela Helmer-Citterich (Nucleic Acids Res., 2007)

Multi-scale Simulation of T Helper Lymphocyte Differentiation. - Paolo Tieri; Vinca Prana; Teresa Colombo; Daniele Santoni; Filippo Castiglione (BSB, 2014)

Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer. - Paola Paci; Teresa Colombo; Lorenzo Farina (BMC Syst. Biol., 2014)

Mining sponge phenomena in RNA expression data. - Fabrizio Angiulli; Teresa Colombo; Fabio Fassetti; Angelo Furfaro; Paola Paci (J. Bioinform. Comput. Biol., 2022)