Support vector machine classification and validation of cancer tissue samples using microarray expression data. - Terrence S. Furey; Nello Cristianini; Nigel Duffy; David W. Bednarski; Michèl Schummer; David Haussler (Bioinform., 2000)

Promoter Region-Based Classification of Genes. - Paul Pavlidis; Terrence S. Furey; M. Liberto; David Haussler; William Noble Grundy (Pacific Symposium on Biocomputing, 2001)

The UCSC Genome Browser Database. - Donna Karolchik; Robert Baertsch; Mark Diekhans; Terrence S. Furey; Angela S. Hinrichs; Yontao Lu; Krishna M. Roskin; Matt Schwartz; Charles W. Sugnet; Daryl J. Thomas; Ryan J. Weber; David Haussler; et al. (Nucleic Acids Res., 2003)

The UCSC Table Browser data retrieval tool. - Donna Karolchik; Angela S. Hinrichs; Terrence S. Furey; Krishna M. Roskin; Charles W. Sugnet; David Haussler; W. James Kent (Nucleic Acids Res., 2004)

The UCSC Genome Browser Database: update 2006. - Angela S. Hinrichs; Donna Karolchik; Robert Baertsch; Galt P. Barber; Gill Bejerano; Hiram Clawson; Mark Diekhans; Terrence S. Furey; Rachel A. Harte; Fan Hsu; Jennifer Hillman-Jackson; Robert M. Kuhn; et al. (Nucleic Acids Res., 2006)

Evidence of Influence of Genomic DNA Sequence on Human X Chromosome Inactivation. - Zhong Wang 003; Huntington F. Willard; Sayan Mukherjee 001; Terrence S. Furey (PLoS Comput. Biol., 2006)

Genomic sweeping for hypermethylated genes. - Liang Goh; Susan K. Murphy; Sayan Mukherjee 001; Terrence S. Furey (Bioinform., 2007)

F-Seq: a feature density estimator for high-throughput sequence tags. - Alan P. Boyle; Justin Guinney; Gregory E. Crawford; Terrence S. Furey (Bioinform., 2008)

A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins. - Mats Ensterö; Örjan Åkerborg; Daniel Lundin; Bei Wang 001; Terrence S. Furey; Marie Öhman; Jens Lagergren (BMC Bioinform., 2010)

A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data. - Zheng Xu 010; Guosheng Zhang; Fulai Jin; Mengjie Chen; Terrence S. Furey; Patrick F. Sullivan; Zhaohui S. Qin; Ming Hu 001; Yun Li (Bioinform., 2016)

DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter. - Bryan Quach; Terrence S. Furey (Bioinform., 2017)

Correcting nucleotide-specific biases in high-throughput sequencing data. - Jeremy R. Wang; Bryan Quach; Terrence S. Furey (BMC Bioinform., 2017)

ROCCO: a robust method for detection of open chromatin via convex optimization. - Nolan H. Hamilton; Terrence S. Furey (Bioinform., 2023)

CoVar: A generalizable machine learning approach to identify the coordinated regulators driving variational gene expression. - Satyaki Roy; Shehzad Z. Sheikh; Terrence S. Furey (PLoS Comput. Biol., 2024)