GENEASE: real time bioinformatics tool for multi-omics and disease ontology exploration, analysis and visualization. - Sudhir Ghandikota; Gurjit K. Khurana Hershey; Tesfaye B. Mersha (Bioinform., 2018)

DiffGRN: differential gene regulatory network analysis. - Youngsoon Kim; Jie Hao; Yadu Gautam; Tesfaye B. Mersha; Mingon Kang (Int. J. Data Min. Bioinform., 2018)

Unraveling Asthma Racial Disparities in Emergency Department Visit Using Electronic Healthcare Records and Machine Learning Algorithms. - Adeboye A. Adejare; Yadu Gautam; Mekibib Altaye; Tesfaye B. Mersha (AMIA, 2019)

MI-MAAP: marker informativeness for multi-ancestry admixed populations. - Siqi Chen; Sudhir Ghandikota; Yadu Gautam; Tesfaye B. Mersha (BMC Bioinform., 2020)

A roadmap for multi-omics data integration using deep learning. - Mingon Kang; Euiseong Ko; Tesfaye B. Mersha (Briefings Bioinform., 2022)

SPIN: sex-specific and pathway-based interpretable neural network for sexual dimorphism analysis. - Euiseong Ko; Youngsoon Kim; Farhad Shokoohi; Tesfaye B. Mersha; Mingon Kang (Briefings Bioinform., 2024)