Gene Recognition in Cyanobacterium Genomic Sequence Data Using the Hidden Markov Model. - Tetsushi Yada; Makoto Hirosawa (ISMB, 1996)

Functional Prediction of B. subtilis Genes from Their Regulatory Sequences. - Tetsushi Yada; Yasushi Totoki; Takahiro Ishii; Kenta Nakai (ISMB, 1997)

Automatic extraction of motifs represented in the hidden Markov model from a number of DNA sequences. - Tetsushi Yada; Yasushi Totoki; Masato Ishikawa; Kiyoshi Asai; Kenta Nakai (Bioinform., 1998)

Modeling and predicting transcriptional units of <$O_SSF>Escherichia coli<$C_SSF>genes using hidden Markov models. - Tetsushi Yada; Mitsuteru Nakao; Yasushi Totoki; Kenta Nakai (Bioinform., 1999)

DIGIT: A Novel Gene Finding Program by Combining Gene-Finders. - Tetsushi Yada; Yasushi Totoki; Y. Takaeda; Yasubumi Sakaki; Toshihisa Takagi (Pacific Symposium on Biocomputing, 2003)

Large-scale motif discovery using DNA Gray code and equiprobable oligomers. - Natsuhiro Ichinose; Tetsushi Yada; Osamu Gotoh (Bioinform., 2012)

Genome Alignment. - Tetsushi Yada (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)