Accurate microRNA target prediction correlates with protein repression levels. - Manolis Maragkakis; Panagiotis Alexiou; Giorgos L. Papadopoulos; Martin Reczko; Theodore Dalamagas 001; Giorgos Giannopoulos; George I. Goumas; Evangelos Koukis; Kornilios Kourtis; Victor A. Simossis; Praveen Sethupathy; Thanasis Vergoulis; et al. (BMC Bioinform., 2009)

DIANA-microT web server: elucidating microRNA functions through target prediction. - Manolis Maragkakis; Martin Reczko; Victor A. Simossis; Panagiotis Alexiou; Giorgos L. Papadopoulos; Theodore Dalamagas 001; Giorgos Giannopoulos; Georgios I. Goumas; Evangelos Koukis; Kornilios Kourtis; Thanasis Vergoulis; Nectarios Koziris; et al. (Nucleic Acids Res., 2009)

miRGen 2.0: a database of microRNA genomic information and regulation. - Panagiotis Alexiou; Thanasis Vergoulis; Martin Gleditzsch; George Prekas; Theodore Dalamagas 001; Molly Megraw; Ivo Grosse; Timos K. Sellis; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2010)

DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association. - Manolis Maragkakis; Thanasis Vergoulis; Panagiotis Alexiou; Martin Reczko; Kyriaki Plomaritou; Mixail Gousis; Kornilios Kourtis; Nectarios Koziris; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2011)

TARCLOUD: A Cloud-Based Platform to Support miRNA Target Prediction. - Thanasis Vergoulis; Michail Alexakis; Theodore Dalamagas 001; Manolis Maragkakis; Artemis G. Hatzigeorgiou; Timos K. Sellis (SSDBM, 2012)

TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. - Thanasis Vergoulis; Ioannis S. Vlachos; Panagiotis Alexiou; George Georgakilas; Manolis Maragkakis; Martin Reczko; Stefanos Gerangelos; Nectarios Koziris; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2012)

DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. - Ioannis S. Vlachos; Nikos Kostoulas; Thanasis Vergoulis; Georgios K. Georgakilas; Martin Reczko; Manolis Maragkakis; Maria D. Paraskevopoulou; Kostantinos Prionidis; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2012)

Approximate regional sequence matching for genomic databases. - Thanasis Vergoulis; Theodore Dalamagas 001; Dimitris Sacharidis; Timos K. Sellis (VLDB J., 2012)

DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. - Maria D. Paraskevopoulou; Georgios K. Georgakilas; Nikos Kostoulas; Ioannis S. Vlachos; Thanasis Vergoulis; Martin Reczko; Christos Filippidis; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2013)

MR-microT: a MapReduce-based MicroRNA target prediction method. - Ilias Kanellos; Thanasis Vergoulis; Dimitris Sacharidis; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou; Stelios Sartzetakis; Timos K. Sellis (SSDBM, 2014)

Publishing Diachronic Life Science Linked Data. - Katerina Gkirtzou; Thanasis Vergoulis; Artemis G. Hatzigeorgiou; Timos K. Sellis; Theodore Dalamagas 001 (SWAT4LS, 2014)

Προηγμένες υπηρεσίες αναζήτησης και διαχείρισης δεδομένων στις βιοεπιστήμες - Thanasis Vergoulis (2014)

MirPub v2: Towards Ranking and Refining miRNA Publication Search Results. - Ilias Kanellos; Vasiliki Vlachokyriakou; Thanasis Vergoulis; Georgios K. Georgakilas; Yannis Vassiliou; Artemis G. Hatzigeorgiou; Theodore Dalamagas 001 (TPDL, 2015)

TarMiner: automatic extraction of miRNA targets from literature. - Rodothea-Myrsini Tsoupidi; Ilias Kanellos; Thanasis Vergoulis; Ioannis S. Vlachos; Artemis G. Hatzigeorgiou; Theodore Dalamagas 001 (SSDBM, 2015)

mirPub: a database for searching microRNA publications. - Thanasis Vergoulis; Ilias Kanellos; Nikos Kostoulas; Georgios K. Georgakilas; Timos K. Sellis; Artemis G. Hatzigeorgiou; Theodore Dalamagas 001 (Bioinform., 2015)

DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA: mRNA interactions. - Ioannis S. Vlachos; Maria D. Paraskevopoulou; Dimitra Karagkouni; Georgios K. Georgakilas; Thanasis Vergoulis; Ilias Kanellos; Ioannis-Laertis Anastasopoulos; Sofia Maniou; Konstantina Karathanou; Despina Kalfakakou; Athanasios Fevgas; Theodore Dalamagas 001; et al. (Nucleic Acids Res., 2015)

DIANA-miRPath v3.0: deciphering microRNA function with experimental support. - Ioannis S. Vlachos; Konstantinos Zagganas; Maria D. Paraskevopoulou; Georgios K. Georgakilas; Dimitra Karagkouni; Thanasis Vergoulis; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2015)

DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. - Georgios K. Georgakilas; Ioannis S. Vlachos; Konstantinos Zagganas; Thanasis Vergoulis; Maria D. Paraskevopoulou; Ilias Kanellos; Panayiotis Tsanakas; Dimitris Dellis; Athanasios Fevgas; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2016)

DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. - Maria D. Paraskevopoulou; Ioannis S. Vlachos; Dimitra Karagkouni; Georgios K. Georgakilas; Ilias Kanellos; Thanasis Vergoulis; Konstantinos Zagganas; Panayiotis Tsanakas; Evangelos Floros; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2016)

DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. - Ioannis S. Vlachos; Thanasis Vergoulis; Maria D. Paraskevopoulou; Filopoimin Lykokanellos; Georgios K. Georgakilas; Penny Georgiou; Serafeim Chatzopoulos; Dimitra Karagkouni; Foteini Christodoulou; Theodore Dalamagas 001; Artemis G. Hatzigeorgiou (Nucleic Acids Res., 2016)

BUFET: boosting the unbiased miRNA functional enrichment analysis using bitsets. - Konstantinos Zagganas; Thanasis Vergoulis; Maria D. Paraskevopoulou; Ioannis S. Vlachos; Spiros Skiadopoulos; Theodore Dalamagas 001 (BMC Bioinform., 2017)

DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions. - Dimitra Karagkouni; Maria D. Paraskevopoulou; Serafeim Chatzopoulos; Ioannis S. Vlachos; Spyros Tastsoglou; Ilias Kanellos; Dimitris Papadimitriou; Ioannis Kavakiotis; Sofia Maniou; Giorgos Skoufos; Thanasis Vergoulis; Theodore Dalamagas 001; et al. (Nucleic Acids Res., 2018)

BIP! Finder: Facilitating Scientific Literature Search by Exploiting Impact-Based Ranking. - Thanasis Vergoulis; Serafeim Chatzopoulos; Ilias Kanellos; Panagiotis Deligiannis; Christos Tryfonopoulos; Theodore Dalamagas 001 (CIKM, 2019)

SciTo Trends: Visualising Scientific Topic Trends. - Serafeim Chatzopoulos; Panagiotis Deligiannis; Thanasis Vergoulis; Ilias Kanellos; Christos Tryfonopoulos; Theodore Dalamagas 001 (TPDL, 2019)

A Study on the Readability of Scientific Publications. - Thanasis Vergoulis; Ilias Kanellos; Anargiros Tzerefos; Serafeim Chatzopoulos; Theodore Dalamagas 001; Spiros Skiadopoulos (TPDL, 2019)

Databases and Information Systems in the AI Era: Contributions from ADBIS, TPDL and EDA 2020 Workshops and Doctoral Consortium. - Ladjel Bellatreche; Fadila Bentayeb; Mária Bieliková; Omar Boussaid; Barbara Catania; Paolo Ceravolo; Elena Demidova; Mírian Halfeld Ferrari; María Teresa Gómez-López; Carmem S. Hara; Slavica Kordic; Ivan Lukovic; et al. (ADBIS/TPDL/EDA Workshops, 2020)

ArtSim: Improved Estimation of Current Impact for Recent Articles. - Serafeim Chatzopoulos; Thanasis Vergoulis; Ilias Kanellos; Theodore Dalamagas 001; Christos Tryfonopoulos (ADBIS/TPDL/EDA Workshops, 2020)

VeTo: Expert Set Expansion in Academia. - Thanasis Vergoulis; Serafeim Chatzopoulos; Theodore Dalamagas 001; Christos Tryfonopoulos (TPDL, 2020)

Efficient Calculation of Empirical P-values for Association Testing of Binary Classifications. - Konstantinos Zagganas; Thanasis Vergoulis; Spiros Skiadopoulos; Theodore Dalamagas 001 (SSDBM, 2020)

SPHINX: A System for Metapath-based Entity Exploration in Heterogeneous Information Networks. - Serafeim Chatzopoulos; Kostas Patroumpas; Alexandros Zeakis; Thanasis Vergoulis; Dimitrios Skoutas 001 (Proc. VLDB Endow., 2020)

Ranking Papers by Expected Short-Term Impact. - Ilias Kanellos; Thanasis Vergoulis; Dimitris Sacharidis (Predicting the Dynamics of Research Impact, 2021)

A Cloud-Native NGS Data Processing and Annotation Platform. - Giannis Mouchakis; Babis Kostopoulos; Stasinos Konstantopoulos; Ilias Kanellos; Anargiros Tzerefos; Thanasis Vergoulis; Thodoris Dalamagas 001 (Poly/DMAH@VLDB, 2021)

SciNeM: A Scalable Data Science Tool for Heterogeneous Network Mining. - Serafeim Chatzopoulos; Thanasis Vergoulis; Panagiotis Deligiannis; Dimitrios Skoutas 001; Theodore Dalamagas 001; Christos Tryfonopoulos (EDBT, 2021)

Simplifying Impact Prediction for Scientific Articles. - Thanasis Vergoulis; Ilias Kanellos; Giorgos Giannopoulos; Theodore Dalamagas 001 (EDBT/ICDT Workshops, 2021)

Simplifying p-value calculation for the unbiased microRNAenrichment analysis, using ML-techniques. - Konstantinos Zagganas; Maria Lioli; Thanasis Vergoulis; Theodore Dalamagas 001 (EDBT/ICDT Workshops, 2021)

Ranking Papers by their Short-Term Scientific Impact. - Ilias Kanellos; Thanasis Vergoulis; Dimitris Sacharidis; Theodore Dalamagas 001; Yannis Vassiliou (ICDE, 2021)

VeTo-web: A Recommendation Tool for the Expansion of Sets of Scholars. - Serafeim Chatzopoulos; Thanasis Vergoulis; Theodore Dalamagas 001; Christos Tryfonopoulos (JCDL, 2021)

SCHeMa: Scheduling Scientific Containers on a Cluster of Heterogeneous Machines. - Thanasis Vergoulis; Konstantinos Zagganas; Loukas Kavouras; Martin Reczko; Stelios Sartzetakis; Theodore Dalamagas 001 (SSDBM, 2021)

Visualising Scientific Topic Evolution. - Panagiotis Deligiannis; Thanasis Vergoulis; Serafeim Chatzopoulos; Christos Tryfonopoulos (WWW (Companion Volume), 2021)

BIP! DB: A Dataset of Impact Measures for Scientific Publications. - Thanasis Vergoulis; Ilias Kanellos; Claudio Atzori; Andrea Mannocci; Serafeim Chatzopoulos; Sandro La Bruzzo; Natalia Manola; Paolo Manghi (WWW (Companion Volume), 2021)

Further improvements on estimating the popularity of recently published papers. - Serafeim Chatzopoulos; Thanasis Vergoulis; Ilias Kanellos; Theodore Dalamagas 001; Christos Tryfonopoulos (Quant. Sci. Stud., 2021)

New trends in scientific knowledge graphs and research impact assessment. - Paolo Manghi; Andrea Mannocci; Francesco Osborne; Dimitris Sacharidis; Angelo A. Salatino; Thanasis Vergoulis (Quant. Sci. Stud., 2021)

BIP4COVID19: Releasing impact measures for articles relevant to COVID-19. - Thanasis Vergoulis; Ilias Kanellos; Serafeim Chatzopoulos; Danae Pla Karidi; Theodore Dalamagas 001 (Quant. Sci. Stud., 2021)

Impact-Based Ranking of Scientific Publications: A Survey and Experimental Evaluation. - Ilias Kanellos; Thanasis Vergoulis; Dimitris Sacharidis; Theodore Dalamagas 001; Yannis Vassiliou (IEEE Trans. Knowl. Data Eng., 2021)

SurvAnnT: Facilitating Community-Led Scientific Surveys and Annotations. - Anargiros Tzerefos; Ilias Kanellos; Serafeim Chatzopoulos; Theodore Dalamagas 001; Thanasis Vergoulis (TPDL, 2022)

A Preliminary Assessment of the Article Deduplication Algorithm Used for the OpenAIRE Research Graph. - Kleanthis Vichos; Michele De Bonis; Ilias Kanellos; Serafeim Chatzopoulos; Claudio Atzori; Natalia Manola; Paolo Manghi; Thanasis Vergoulis (IRCDL, 2022)

BIP! scholar: a service to facilitate fair researcher assessment. - Thanasis Vergoulis; Serafeim Chatzopoulos; Kleanthis Vichos; Ilias Kanellos; Andrea Mannocci; Natalia Manola; Paolo Manghi (JCDL, 2022)

Accepted Tutorials at The Web Conference 2022. - Riccardo Tommasini 001; Senjuti Basu Roy; Xuan Wang 008; Hongwei Wang; Heng Ji 001; Jiawei Han 001; Preslav Nakov; Giovanni Da San Martino; Firoj Alam; Markus Schedl; Elisabeth Lex; Akash Bharadwaj; et al. (WWW (Companion Volume), 2022)

Sci-K 2022 - International Workshop on Scientific Knowledge: Representation, Discovery, and Assessment. - Paolo Manghi; Andrea Mannocci; Francesco Osborne; Dimitris Sacharidis; Angelo A. Salatino; Thanasis Vergoulis (WWW (Companion Volume), 2022)

ATRAPOS: Evaluating Metapath Query Workloads in Real Time. - Serafeim Chatzopoulos; Thanasis Vergoulis; Dimitrios Skoutas 001; Theodore Dalamagas 001; Christos Tryfonopoulos; Panagiotis Karras (CoRR, 2022)

VeTo+: improved expert set expansion in academia. - Serafeim Chatzopoulos; Thanasis Vergoulis; Theodore Dalamagas 001; Christos Tryfonopoulos (Int. J. Digit. Libr., 2022)

BIP! NDR (NoDoiRefs): A Dataset of Citations from Papers Without DOIs in Computer Science Conferences and Workshops. - Paris Koloveas; Serafeim Chatzopoulos; Christos Tryfonopoulos; Thanasis Vergoulis (TPDL, 2023)

Piloting Topic-Aware Research Impact Assessment Features in BIP! Services. - Serafeim Chatzopoulos; Kleanthis Vichos; Ilias Kanellos; Thanasis Vergoulis (ESWC (Satellite Events), 2023)

Atrapos: Real-time Evaluation of Metapath Query Workloads. - Serafeim Chatzopoulos; Thanasis Vergoulis; Dimitrios Skoutas 001; Theodore Dalamagas 001; Christos Tryfonopoulos; Panagiotis Karras (WWW, 2023)

3rd International Workshop on Scientific Knowledge Representation, Discovery, and Assessment (Sci-K 2023). - Angelo Antonio Salatino; Yi Bu 001; Ying Ding 001; Ágnes Horvát; Yong Huang 008; Meijun Liu; Paolo Manghi; Andrea Mannocci; Francesco Osborne; Daniel M. Romero; Dimitris Sacharidis; Misha Teplitskiy; et al. (WWW (Companion Volume), 2023)

A Virtual Laboratory for Managing Computational Experiments. - Eleni Adamidi; Panayiotis Deligiannis; Nikos Foutris; Thanasis Vergoulis (SSDBM, 2025)

Can LLMs Predict Citation Intent? An Experimental Analysis of In-context Learning and Fine-tuning on Open LLMs. - Paris Koloveas; Serafeim Chatzopoulos; Thanasis Vergoulis; Christos Tryfonopoulos (CoRR, 2025)

From raw affiliations to organization identifiers. - Myrto Kallipoliti; Serafeim Chatzopoulos; Miriam Baglioni; Eleni Adamidi; Paris Koloveas; Thanasis Vergoulis (CoRR, 2025)

Open and Sustainable AI: challenges, opportunities and the road ahead in the life sciences. - Gavin Farrell; Eleni Adamidi; Rafael Andrade Buono; Mihail Anton; Omar Abdelghani Attafi; Salvador Capella-Gutiérrez; Emidio Capriotti; Leyla Jael Castro; Davide Cirillo; Lisa C. Crossman; Christophe Dessimoz; Alexandros C. Dimopoulos; et al. (CoRR, 2025)

Accelerating Scientific Discovery with Multi-Document Summarization of Impact-Ranked Papers. - Paris Koloveas; Serafeim Chatzopoulos; Dionysis Diamantis; Christos Tryfonopoulos; Thanasis Vergoulis (CoRR, 2025)