Literature mining of host-pathogen interactions: comparing feature-based supervised learning and language-based approaches. - Thanh Thieu; Sneha Joshi; Samantha Warren; Dmitry Korkin (Bioinform., 2012)

Inductive identification of functional status information and establishing a gold standard corpus: A case study on the Mobility domain. - Thanh Thieu; Jonathan Camacho; Pei-Shu Ho; Julia Porcino; Min Ding; Lisa Nelson; Elizabeth Rasch; Chunxiao Zhou; Leighton Chan; Diane Brandt; Denis Newman-Griffis; Ao Yuan; et al. (BIBM, 2017)

Characterizing the Language of Functioning: A Corpus Analysis Illustrating How Human Function is Described in Clinical Text. - Denis R. Newman-Griffis; Thanh Thieu; Chunxiao Zhou; Diane Brandt; Jonathan Camacho Maldonado; Julia Porcino; Albert M. Lai; Leighton Chan (CRI, 2017)

Computer-assisted medical billing information extraction: comparing rule-based and end-to-end transfer learning approaches. - Suhao Chen; Tuan-Dung Le; Thanh Thieu; Zhuqi Miao; Phuong D. Nguyen; Andrew Gin (CHASE, 2021)

A high-throughput, online tool for investigating host-pathogen macromolecular interactions buried in scientific literature. - Tuan-Dung Le; Phuong D. Nguyen; Dmitry Korkin; Thanh Thieu (CHASE, 2021)

LexDivPara: A Measure of Paraphrase Quality with Integrated Sentential Lexical Complexity. - Thanh Thieu; Ha Do; Thanh Duong; Shi Pu; Sathyanarayanan N. Aakur; Saad Khan 008 (IntelliSys (3), 2021)

A comprehensive study of mobility functioning information in clinical notes: Entity hierarchy, corpus annotation, and sequence labeling. - Thanh Thieu; Jonathan Camacho Maldonado; Pei-Shu Ho; Min Ding; Alex Marr; Diane Brandt; Denis Newman-Griffis; Ayah Zirikly; Leighton Chan; Elizabeth Rasch (Int. J. Medical Informatics, 2021)

PHILM2Web: A high-throughput database of macromolecular host-pathogen interactions on the Web. - Tuan-Dung Le; Phuong D. Nguyen; Dmitry Korkin; Thanh Thieu (Database J. Biol. Databases Curation, 2022)

Leveraging deep active learning to identify low-resource mobility functioning information in public clinical notes. - Tuan-Dung Le; Zhuqi Miao; Samuel Alvarado; Brittany Smith; William Paiva; Thanh Thieu (CoRR, 2023)

Low-resource classification of mobility functioning information in clinical sentences using large language models. - Tuan-Dung Le; Thanh Duong; Thanh Thieu (CoRR, 2023)

LAILab at Chemotimelines 2024: Finetuning sequence-to-sequence language models for temporal relation extraction towards cancer patient undergoing chemotherapy treatment. - Shohreh Haddadan; Tuan-Dung Le; Thanh Duong; Thanh Thieu (ClinicalNLP@NAACL, 2024)

OncoNLP: Cancer Comprehend Annotation - a Pipeline for Cancer Phenotype and Clinical Extraction. - Thanh Duong; Thanh Thieu (BHI, 2024)

A novel hyperparameter search approach for accuracy and simplicity in disease prediction risk scoring. - Yajun Lu; Thanh Duong; Zhuqi Miao; Thanh Thieu; Jivan Lamichhane; Abdulaziz Ahmed; Dursun Delen (J. Am. Medical Informatics Assoc., 2024)

ParKQ: An automated Paraphrase ranKing Quality measure that balances semantic similarity with lexical diversity. - Thanh Duong; Tuan-Dung Le; Ho'omana Nathan Horton; Stephanie Link; Thanh Thieu (Nat. Lang. Process. J., 2024)

Extracting Patient History from Clinical Text: A Comparative Study of Clinical Large Language Models. - Hieu Nghiem; Tuan-Dung Le; Suhao Chen; Thanh Thieu; Andrew Gin; Ellie Phuong Nguyen; Dursun Delen; Johnson Thomas; Jivan Lamichhane; Zhuqi Miao (CoRR, 2025)