Quantification of Prostate Deformation due to Needle Insertion during TRUS-guided Biopsy. - Tharindu De Silva; Aaron Fenster; Jagath Samarabandu; Aaron D. Ward (MICCAI (3), 2010)

2D-3D rigid registration to compensate for prostate motion during 3D TRUS-guided biopsy. - Tharindu De Silva; Aaron Fenster; Jeffrey S. Bax; Lori Gardi; Cesare Romagnoli; Jagath Samarabandu; Aaron D. Ward (Image-Guided Procedures, 2012)

Improving 2D-3D Registration Optimization Using Learned Prostate Motion Data. - Tharindu De Silva; Derek W. Cool; Jing Yuan 001; Cesare Romagnoli; Aaron Fenster; Aaron D. Ward (MICCAI (2), 2013)

Evaluating the utility of 3D TRUS image information in guiding intra-procedure registration for motion compensation. - Tharindu De Silva; Derek W. Cool; Cesare Romagnoli; Aaron Fenster; Aaron D. Ward (Image-Guided Procedures, 2014)

Known-component 3D-2D registration for image guidance and quality assurance in spine surgery pedicle screw placement. - Ali Uneri; J. Webster Stayman; Tharindu De Silva; Andrew Shenq-Yen Wang; Gerhard Kleinszig; Sebastian Vogt 001; A. Jay Khanna; Jean-Paul Wolinsky; Ziya L. Gokaslan; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2015)

Deformable 3D-2D Registration of Known Components for Image Guidance in Spine Surgery. - Ali Uneri; Joseph Görres; Tharindu De Silva; Matthew W. Jacobson; Michael D. Ketcha; Sureerat Reaungamornrat; Gerhard Kleinszig; Sebastian Vogt 001; Akhil J. Khanna; Jean-Paul Wolinsky; Jeffrey H. Siewerdsen (MICCAI (3), 2016)

Automatic masking for robust 3D-2D image registration in image-guided spine surgery. - Michael D. Ketcha; Tharindu De Silva; Ali Uneri; Gerhard Kleinszig; Sebastian Vogt 001; Jean-Paul Wolinsky; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2016)

MIND Demons for MR-to-CT deformable image registration in image-guided spine surgery. - Sureerat Reaungamornrat; Tharindu De Silva; Ali Uneri; Jean-Paul Wolinsky; A. Jay Khanna; Gerhard Kleinszig; Sebastian Vogt 001; Jerry L. Prince; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2016)

MIND Demons: Symmetric Diffeomorphic Deformable Registration of MR and CT for Image-Guided Spine Surgery. - Sureerat Reaungamornrat; Tharindu De Silva; Ali Uneri; Sebastian Vogt 001; Gerhard Kleinszig; Akhil J. Khanna; Jean-Paul Wolinsky; Jerry L. Prince; Jeffrey H. Siewerdsen (IEEE Trans. Medical Imaging, 2016)

Enhanced Real-Time Machine Inspection with Mobile Augmented Reality for Maintenance and Repair: Demo Abstract. - Malith Jayaweera; Indika Wijesooriya; Damith Wijewardana; Tharindu De Silva; Chandana Gamage (IoTDI, 2017)

Deformable 3D-2D registration for guiding K-wire placement in pelvic trauma surgery. - Joseph Görres; Matthew W. Jacobson; Ali Uneri; Tharindu De Silva; Michael D. Ketcha; Sureerat Reaungamornrat; Sebastian Vogt 001; Gerhard Kleinszig; Jean-Paul Wolinsky; G. Osgood; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2017)

Fundamental limits of image registration performance: effects of image noise and resolution in CT-guided interventions. - Michael D. Ketcha; Tharindu De Silva; Runze Han; Ali Uneri; Joseph Görres; Matthew W. Jacobson; Sebastian Vogt 001; Gerhard Kleinszig; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2017)

C-arm positioning using virtual fluoroscopy for image-guided surgery. - Tharindu De Silva; Joshua Punnoose; Ali Uneri; Joseph Görres; Matthew W. Jacobson; Michael D. Ketcha; Amir Manbachi; Sebastian Vogt 001; Gerhard Kleinszig; Akhil J. Khanna; Jean-Paul Wolinsky; G. Osgood; et al. (Image-Guided Procedures, 2017)

Integration of free-hand 3D ultrasound and mobile C-arm cone-beam CT: Feasibility and characterization for real-time guidance of needle insertion. - Eugenio Marinetto; Ali Uneri; Tharindu De Silva; Sureerat Reaungamornrat; Wojciech Zbijewski; Alejandro Sisniega; Sebastian Vogt 001; Gerhard Kleinszig; Javier Pascau; Jeffrey H. Siewerdsen (Comput. Medical Imaging Graph., 2017)

Effects of Image Quality on the Fundamental Limits of Image Registration Accuracy. - Michael D. Ketcha; Tharindu De Silva; Runze Han; Ali Uneri; Joseph Görres; Matthew W. Jacobson; Sebastian Vogt 001; Gerhard Kleinszig; Jeffrey H. Siewerdsen (IEEE Trans. Medical Imaging, 2017)

Robust 2-D-3-D Registration Optimization for Motion Compensation During 3-D TRUS-Guided Biopsy Using Learned Prostate Motion Data. - Tharindu De Silva; Derek W. Cool; Jing Yuan 001; Cesare Romagnoli; Jagath Samarabandu; Aaron Fenster; Aaron D. Ward (IEEE Trans. Medical Imaging, 2017)

Technical note: design and validation of an open-source library of dynamic reference frames for research and education in optical tracking. - A. Brown; Ali Uneri; Tharindu De Silva; Amir Manbachi; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2018)

Automatic definition of surgical trajectories and acceptance window in pelvic trauma surgery using deformable registration. - Runze Han; B. Ramsay; Tharindu De Silva; Joseph Görres; Ali Uneri; Michael D. Ketcha; Matthew W. Jacobson; Niral Sheth; Sebastian Vogt 001; Gerhard Kleinszig; G. Osgood; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2018)

Clustered iterative sub-atlas registration for improved deformable registration using statistical shape models. - B. Ramsay; Tharindu De Silva; Runze Han; Michael D. Ketcha; Ali Uneri; Joseph Görres; Niral Sheth; Matthew W. Jacobson; Sebastian Vogt 001; Gerhard Kleinszig; G. Osgood; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2018)

Real-time, image-based 3D-2D registration for ultrasound-guided spinal interventions. - Tharindu De Silva; Ali Uneri; Xiaoxuan Zhang; Michael D. Ketcha; Runze Han; Matthew W. Jacobson; Niral Sheth; Sebastian Vogt 001; Gerhard Kleinszig; A. Belzberg; D. M. Sciubba; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2018)

A statistical model for image registration performance: effect of tissue deformation. - Michael D. Ketcha; Tharindu De Silva; Runze Han; Ali Uneri; Matthew W. Jacobson; Sebastian Vogt 001; Gerhard Kleinszig; Jeffrey H. Siewerdsen (Image Processing, 2018)

Automatic analysis of global spinal alignment from spine CT images. - Sophia A. Doerr; Tharindu De Silva; Rohan Vijayan; Runze Han; Ali Uneri; Michael D. Ketcha; Xiaoxuan Zhang; Nishanth Khanna; Erick Westbroek; Bowen Jiang 003; Corinna C. Zygourakis; Nafi Aygun; et al. (Image-Guided Procedures, 2019)

Automatic vertebrae localization in spine CT: a deep-learning approach for image guidance and surgical data science. - Marc Levine; Tharindu De Silva; Michael D. Ketcha; Rohan Vijayan; Sophia A. Doerr; Ali Uneri; S. Swaroop Vedula; Nicholas Theodore; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2019)

Automatic trajectory and instrument planning for robot-assisted spine surgery. - Rohan C. Vijayan; Tharindu S. De Silva; Runze Han; Ali Uneri; Sophia A. Doerr; Michael D. Ketcha; Alexander Perdomo-Pantoja; Nicholas Theodore; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2019)

Effect of statistical mismatch between training and test images for CNN-based deformable registration. - Michael D. Ketcha; Tharindu De Silva; Runze Han; Ali Uneri; Sebastian Vogt 001; Gerhard Kleinszig; Jeffrey H. Siewerdsen (Image Processing, 2019)

A Statistical Model for Rigid Image Registration Performance: The Influence of Soft-Tissue Deformation as a Confounding Noise Source. - Michael D. Ketcha; Tharindu De Silva; Runze Han; Ali Uneri; Sebastian Vogt 001; Gerhard Kleinszig; Jeffrey H. Siewerdsen (IEEE Trans. Medical Imaging, 2019)

SpineCloud: image analytics for predictive modeling of spine surgery outcomes. - Tharindu De Silva; S. Swaroop Vedula; Alexander Perdomo-Pantoja; Rohan Vijayan; Sophia A. Doerr; Ali Uneri; Runze Han; Michael D. Ketcha; R. L. Skolasky Jr.; Brian Caffo; Greg Hager; Timothy Witham; et al. (Image-Guided Procedures, 2020)

Calibration and registration of a freehand video-guided surgical drill for orthopaedic trauma. - Prasad Vagdargi; Ali Uneri; Niral Sheth; Alejandro Sisniega; Tharindu De Silva; G. M. Osgood; Jeffrey H. Siewerdsen (Image-Guided Procedures, 2020)

Feature-based retinal image registration for longitudinal analysis of patients with age-related macular degeneration. - Tharindu De Silva; Nathan Hotaling; Emily Y. Chew; Catherine Cukras (Image Processing, 2020)

Automatic detection of ellipsoid zone loss due to Hydroxychloroquine retinal toxicity from SD-OCT imaging. - Tharindu S. De Silva; Gopal Jayakar; Peyton Grisso; Emily Y. Chew; Nathan Hotaling; Catherine A. Cukras (Computer-Aided Diagnosis, 2021)

Device specific SD-OCT retinal layer segmentation using cycle-generative adversarial networks in patients with AMD. - Souvick Mukherjee; Tharindu De Silva; Gopal Jayakar; Peyton Grisso; Henry E. Wiley; Tiarnan D. Keenan; Alisa T. Thavikulwat; Emily Y. Chew; Catherine Cukras (Computer-Aided Diagnosis, 2022)

Retinal layer segmentation for age-related macular degeneration patients with 3D-UNet. - Souvick Mukherjee; Tharindu De Silva; Gopal Jayakar; Peyton Grisso; Henry E. Wiley; Tiarnan D. Keenan; Alisa T. Thavikulwat; Emily Y. Chew; Catherine Cukras (Computer-Aided Diagnosis, 2022)

Semi-supervised learning approach for automatic detection of hyperreflective foci in SD-OCT imaging. - Tharindu De Silva; Kristina Heß; Cameron Duic; Souvick Mukherjee; Hector Sandoval; Jessica Aduwo; Tiarnan D. Keenan; Emily Y. Chew; Catherine Cukras (Computer-Aided Diagnosis, 2022)

Drusen segmentation in color fundus photographs for drusenoid pigment epithelial detachment patients based on ground-truth derived from SD-OCTs. - Souvick Mukherjee; Cameron Duic; Tharindu De Silva; Tiarnan D. Keenan; Alisa T. Thavikulwat; Emily Y. Chew; Catherine Cukras (Computer-Aided Diagnosis, 2023)