The Burkholderia Genome Database: facilitating flexible queries and comparative analyses. - Geoffrey L. Winsor; Bhavjinder Khaira; Thea Van Rossum; Raymond Lo; Matthew D. Whiteside; Fiona S. L. Brinkman (Bioinform., 2008)

Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. - Geoffrey L. Winsor; Thea Van Rossum; Raymond Lo; Bhavjinder Khaira; Matthew D. Whiteside; Robert E. W. Hancock; Fiona S. L. Brinkman (Nucleic Acids Res., 2009)

SLIMS - a user-friendly sample operations and inventory management system for genotyping labs. - Thea Van Rossum; Ben W. Tripp; Denise Daley (Bioinform., 2010)

Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data. - Anton Zoubarev; Kelsey M. Hamer; Kiran Keshav; E. Luke McCarthy; Joseph Roy C. Santos; Thea Van Rossum; Cameron McDonald; Adam Hall; Xiang Wan; Raymond Lim; Jesse A. Gillis; Paul Pavlidis (Bioinform., 2012)

Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities. - Michael A. Peabody; Thea Van Rossum; Raymond Lo; Fiona S. L. Brinkman (BMC Bioinform., 2015)

metaSNV v2: detection of SNVs and subspecies in prokaryotic metagenomes. - Thea Van Rossum; Paul I. Costea; Lucas Paoli; Renato Alves; Roman Thielemann; Shinichi Sunagawa; Peer Bork (Bioinform., 2022)