Automatic Exploration of the Natural Variability of RNA Non-Canonical Geometric Patterns with a Parameterized Sampling Technique. - Théo Boury; Yann Ponty; Vladimir Reinharz (WABI, 2023)

RNA Inverse Folding Can Be Solved in Linear Time for Structures Without Isolated Stacks or Base Pairs. - Théo Boury; Laurent Bulteau; Yann Ponty (WABI, 2024)

LinearBPDesign. - Théo Boury; Laurent Bulteau; Yann Ponty (DROPS Artifacts, 2024)

Old Dog, New Tricks: Exact Seeding Strategy Improves RNA Design Performances. - Théo Boury; Leonhard Sidl; Ivo L. Hofacker; Yann Ponty; Hua-Ting Yao (RECOMB, 2025)