A database application for pre-processing, storage and comparison of mass spectra derived from patients and controls. - Mark K. Titulaer; Ivar Siccama; Lennard J. Dekker; Angelique L. C. T. van Rijswijk; Ron M. A. Heeren; Peter A. E. Sillevis Smitt; Theo M. Luider (BMC Bioinform., 2006)

A software application for comparing large numbers of high resolution MALDI-FTICR MS spectra demonstrated by searching candidate biomarkers for glioma blood vessel formation. - Mark K. Titulaer; Dana A. N. Mustafa; Ivar Siccama; Marco Konijnenburg; Peter C. Burgers; Arno C. Andeweg; Peter A. E. Sillevis Smitt; Johan M. Kros; Theo M. Luider (BMC Bioinform., 2008)

Top-down analysis of protein samples by de novo sequencing techniques. - Kira Vyatkina; Si Wu; Lennard J. Dekker; Martijn M. VanDuijn; Xiaowen Liu; Nikola Tolic; Theo M. Luider; Ljiljana Pasa-Tolic; Pavel A. Pevzner (Bioinform., 2016)