Singular Spectrum Analysis of Gene Expression Profiles of Early Drosophila embryo: Exponential-in-Distance Patterns. - Theodore Alexandrov; Nina Golyandina; Alexander V. Spirov (J. Electr. Comput. Eng., 2008)

Automatic Acquisition of the. - Ekaterina Ovchinnikova; Theodore Alexandrov; Tonio Wandmacher (EMNLP, 2009)

Self-taught Learning for Classification of Mass Spectrometry Data: A Case Study of Colorectal Cancer. - Theodore Alexandrov (GCB, 2009)

Biomarker discovery in MALDI-TOF serum protein profiles using discrete wavelet transformation. - Theodore Alexandrov; Jens Decker; Bart J. A. Mertens; André M. Deelder; Rob A. E. M. Tollenaar; Peter Maass; Herbert Thiele (Bioinform., 2009)

Data-Driven and Ontological Analysis of FrameNet for Natural Language Reasoning. - Ekaterina Ovchinnikova; Laure Vieu; Alessandro Oltramari; Stefano Borgo; Theodore Alexandrov (LREC, 2010)

Abductive Reasoning with a Large Knowledge Base for Discourse Processing. - Ekaterina Ovchinnikova; Niloofar Montazeri; Theodore Alexandrov; Jerry R. Hobbs; Michael C. McCord; Rutu Mulkar-Mehta (IWCS, 2011)

Efficient spatial segmentation of large imaging mass spectrometry datasets with spatially aware clustering. - Theodore Alexandrov; Jan Hendrik Kobarg (Bioinform., 2011)

Measuring Gene Expression Noise in Early Drosophila Embryos: The Highly Dynamic Compartmentalized Micro-environment of the Blastoderm Is One of the Main Sources of Noise. - Alexander V. Spirov; Nina Golyandina; David M. Holloway; Theodore Alexandrov; Ekaterina N. Spirova; Francisco J. P. Lopes (EvoBIO, 2012)

A Two-Step Soft Segmentation Procedure for MALDI Imaging Mass Spectrometry Data. - Ilya Chernyavsky; Theodore Alexandrov; Peter Maass; Sergey I. Nikolenko (GCB, 2012)

3D Visualisierung von Organismen. - Herbert Thiele; Dennis Trede; Stefan Heldmann; Theodore Alexandrov; Bernd Fischer 001; Peter Maass (GI-Jahrestagung, 2012)

MALDI imaging mass spectrometry: statistical data analysis and current computational challenges. - Theodore Alexandrov (BMC Bioinform., 2012)

On the Importance of Mathematical Methods for Analysis of MALDI-Imaging Mass Spectrometry Data. - Dennis Trede; Jan Hendrik Kobarg; Janina Oetjen; Herbert Thiele; Peter Maass; Theodore Alexandrov (J. Integr. Bioinform., 2012)

Magnification of Label Maps With a Topology-Preserving Level-Set Method. - Dennis Trede; Theodore Alexandrov; Chen Sagiv; Peter Maass (IEEE Trans. Image Process., 2012)

Testing for presence of known and unknown molecules in imaging mass spectrometry. - Theodore Alexandrov; Andreas M. Bartels (Bioinform., 2013)

Learning How to Run a Lab: Interviews with Principal Investigators. - Theodore Alexandrov; Philip E. Bourne (PLoS Comput. Biol., 2013)

The Young PI Buzz: Learning from the Organizers of the Junior Principal Investigator Meeting at ISMB-ECCB 2013. - Jeroen de Ridder; Yana Bromberg; Magali Michaut; Venkata P. Satagopam; Manuel Corpas; Geoff MacIntyre; Theodore Alexandrov (PLoS Comput. Biol., 2013)

Efficient Spatial Segmentation of Hyper-spectral 3D Volume Data. - Jan Hendrik Kobarg; Theodore Alexandrov (Algorithms from and for Nature and Life, 2013)

Using collective expert judgements to evaluate quality measures of mass spectrometry images. - Andrew Palmer; Ekaterina Ovchinnikova; Mikael Thuné; Régis Lavigne; Blandine Guével; Andrey Dyatlov; Olga Vitek; Charles Pineau; Mats Borén; Theodore Alexandrov (Bioinform., 2015)

Computational Metabolomics: Identification, Interpretation, Imaging (Dagstuhl Seminar 17491). - Theodore Alexandrov; Sebastian Böcker; Pieter C. Dorrestein; Emma Schymanski (Dagstuhl Reports, 2017)

Curatr: a web application for creating, curating and sharing a mass spectral library. - Andrew Palmer; Prasad Phapale; Dominik Fay; Theodore Alexandrov (Bioinform., 2018)

Two-Exponential Models of Gene Expression Patterns for Noisy Experimental Data. - Theodore Alexandrov; Nina Golyandina; David M. Holloway; Alexander Shlemov; Alexander V. Spirov (J. Comput. Biol., 2018)

ColocML: machine learning quantifies co-localization between mass spectrometry images. - Katja Ovchinnikova; Lachlan Stuart; Alexander Rakhlin; Sergey I. Nikolenko; Theodore Alexandrov (Bioinform., 2020)

OffsampleAI: artificial intelligence approach to recognize off-sample mass spectrometry images. - Katja Ovchinnikova; Vitaly Kovalev; Lachlan Stuart; Theodore Alexandrov (BMC Bioinform., 2020)

Serverful Functions: Leveraging Servers in Complex Serverless Workflows (industry track). - Germán T. Eizaguirre; Daniel Barcelona Pons; Aitor Arjona; Gil Vernik; Pedro García López; Theodore Alexandrov (Middleware Industry, 2024)