Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins. - Pantelis G. Bagos; Theodore D. Liakopoulos; Stavros J. Hamodrakas (BMC Bioinform., 2006)

Prediction of Cell Wall Sorting Signals in Gram-Positive bacteria with a Hidden Markov Model: Application to Complete genomes. - Zoi I. Litou; Pantelis G. Bagos; Konstantinos D. Tsirigos; Theodore D. Liakopoulos; Stavros J. Hamodrakas (J. Bioinform. Comput. Biol., 2008)

Combined prediction of Tat and Sec signal peptides with hidden Markov models. - Pantelis G. Bagos; Elisanthi P. Nikolaou; Theodore D. Liakopoulos; Konstantinos D. Tsirigos (Bioinform., 2010)

ExTopoDB: a database of experimentally derived topological models of transmembrane proteins. - Georgios N. Tsaousis; Konstantinos D. Tsirigos; Xanthi D. Andrianou; Theodore D. Liakopoulos; Pantelis G. Bagos; Stavros J. Hamodrakas (Bioinform., 2010)

CW-PRED: A HMM-Based Method for the Classification of Cell Wall-Anchored Proteins of Gram-Positive Bacteria. - Danai K. Fimereli; Konstantinos D. Tsirigos; Zoi I. Litou; Theodore D. Liakopoulos; Pantelis G. Bagos; Stavros J. Hamodrakas (SETN, 2012)