Dissociable but inter-related systems of cognitive control and reward during decision making: Evidence from pupillometry and event-related fMRI. - Theodore D. Satterthwaite; Leonard Green; Joel Myerson; Jamie Parker; Mohana Ramaratnam; Randy L. Buckner (NeuroImage, 2007)

Sparse Dictionary Learning of Resting State fMRI Networks. - Harini Eavani; Roman Filipovych; Christos Davatzikos; Theodore D. Satterthwaite; Raquel E. Gur; Ruben C. Gur (PRNI, 2012)

Multivariate fMRI Analysis Using Optimally-discriminative Voxel-based Analysis. - Tianhao Zhang; Theodore D. Satterthwaite; Mark A. Elliott; Ruben C. Gur; Raquel E. Gur; Christos Davatzikos (PRNI, 2012)

Being right is its own reward: Load and performance related ventral striatum activation to correct responses during a working memory task in youth. - Theodore D. Satterthwaite; Kosha Ruparel; James Loughead; Mark A. Elliott; Raphael T. Gerraty; Monica E. Calkins; Hakon Hakonarson; Ruben C. Gur; Raquel E. Gur; Daniel H. Wolf (NeuroImage, 2012)

Impact of in-scanner head motion on multiple measures of functional connectivity: Relevance for studies of neurodevelopment in youth. - Theodore D. Satterthwaite; Daniel H. Wolf; James Loughead; Kosha Ruparel; Mark A. Elliott; Hakon Hakonarson; Ruben C. Gur; Raquel E. Gur (NeuroImage, 2012)

Unsupervised Learning of Functional Network Dynamics in Resting State fMRI. - Harini Eavani; Theodore D. Satterthwaite; Raquel E. Gur; Ruben C. Gur; Christos Davatzikos (IPMI, 2013)

Identifying patterns in temporal variation of functional connectivity using resting state FMRI. - Harini Eavani; Theodore D. Satterthwaite; Raquel E. Gur; Ruben C. Gur; Christos Davatzikos (ISBI, 2013)

A Graph-Based Brain Parcellation Method Extracting Sparse Networks. - Nicolas Honnorat; Harini Eavani; Theodore D. Satterthwaite; Christos Davatzikos (PRNI, 2013)

ODVBA-C: Optimally-Discriminative Voxel-Based Analysis of Continuous Variables. - Tianhao Zhang; Theodore D. Satterthwaite; Christos Davatzikos (PRNI, 2013)

An improved framework for confound regression and filtering for control of motion artifact in the preprocessing of resting-state functional connectivity data. - Theodore D. Satterthwaite; Mark A. Elliott; Raphael T. Gerraty; Kosha Ruparel; James Loughead; Monica E. Calkins; Simon B. Eickhoff; Hakon Hakonarson; Ruben C. Gur; Raquel E. Gur; Daniel H. Wolf (NeuroImage, 2013)

Heterogeneous impact of motion on fundamental patterns of developmental changes in functional connectivity during youth. - Theodore D. Satterthwaite; Daniel H. Wolf; Kosha Ruparel; Güray Erus; Mark A. Elliott; Simon B. Eickhoff; Efstathios D. Gennatas; Chad Jackson; Karthik Prabhakaran; Alex R. Smith; Hakon Hakonarson; Ragini Verma; et al. (NeuroImage, 2013)

Discriminative Sparse Connectivity Patterns for Classification of fMRI Data. - Harini Eavani; Theodore D. Satterthwaite; Raquel E. Gur; Ruben C. Gur; Christos Davatzikos (MICCAI (3), 2014)

Neuroimaging of the Philadelphia Neurodevelopmental Cohort. - Theodore D. Satterthwaite; Mark A. Elliott; Kosha Ruparel; James Loughead; Karthik Prabhakaran; Monica E. Calkins; Ryan Hopson; Chad Jackson; Jack Keefe; Marisa Riley; Frank D. Mentch; Patrick Sleiman; et al. (NeuroImage, 2014)

Identifying Sparse Connectivity Patterns in the brain using resting-state fMRI. - Harini Eavani; Theodore D. Satterthwaite; Roman Filipovych; Raquel E. Gur; Ruben C. Gur; Christos Davatzikos (NeuroImage, 2015)

GraSP: Geodesic Graph-based Segmentation with Shape Priors for the functional parcellation of the cortex. - Nicolas Honnorat; Harini Eavani; Theodore D. Satterthwaite; Raquel E. Gur; Ruben C. Gur; Christos Davatzikos (NeuroImage, 2015)

Identification of subject-specific brain functional networks using a collaborative sparse nonnegative matrix decomposition method. - Hongming Li; Ted Satterthwaite; Yong Fan 001 (ISBI, 2016)

MUSE: MUlti-atlas region Segmentation utilizing Ensembles of registration algorithms and parameters, and locally optimal atlas selection. - Jimit Doshi; Güray Erus; Yangming Ou; Susan M. Resnick; Ruben C. Gur; Raquel E. Gur; Theodore D. Satterthwaite; Susan Furth; Christos Davatzikos (NeuroImage, 2016)

Control-group feature normalization for multivariate pattern analysis of structural MRI data using the support vector machine. - Kristin A. Linn; Bilwaj Gaonkar; Theodore D. Satterthwaite; Jimit Doshi; Christos Davatzikos; Russell T. Shinohara (NeuroImage, 2016)

The impact of quality assurance assessment on diffusion tensor imaging outcomes in a large-scale population-based cohort. - David R. Roalf; Megan Quarmley; Mark A. Elliott; Theodore D. Satterthwaite; Simon N. Vandekar; Kosha Ruparel; Efstathios D. Gennatas; Monica E. Calkins; Tyler M. Moore; Ryan Hopson; Karthik Prabhakaran; Chad Jackson; et al. (NeuroImage, 2016)

The Philadelphia Neurodevelopmental Cohort: A publicly available resource for the study of normal and abnormal brain development in youth. - Theodore D. Satterthwaite; John J. Connolly; Kosha Ruparel; Monica E. Calkins; Chad Jackson; Mark A. Elliott; David R. Roalf; Karthik Prabhakaran; Ryan Hopson; Meckenzie Behr; Haijun Qiu; Frank D. Mentch; et al. (NeuroImage, 2016)

Subject-level measurement of local cortical coupling. - Simon N. Vandekar; Russell T. Shinohara; Armin Raznahan; Ryan Hopson; David R. Roalf; Kosha Ruparel; Ruben C. Gur; Raquel E. Gur; Theodore D. Satterthwaite (NeuroImage, 2016)

Benchmarking of participant-level confound regression strategies for the control of motion artifact in studies of functional connectivity. - Rastko Ciric; Daniel H. Wolf; Jonathan D. Power; David R. Roalf; Graham L. Baum; Kosha Ruparel; Russell T. Shinohara; Mark A. Elliott; Simon B. Eickhoff; Christos Davatzikos; Ruben C. Gur; Raquel E. Gur; et al. (NeuroImage, 2017)

Harmonization of multi-site diffusion tensor imaging data. - Jean-Philippe Fortin; Drew Parker; Birkan Tunç; Takanori Watanabe; Mark A. Elliott; Kosha Ruparel; David R. Roalf; Theodore D. Satterthwaite; Ruben C. Gur; Raquel E. Gur; Robert T. Schultz; Ragini Verma; et al. (NeuroImage, 2017)

Large-scale sparse functional networks from resting state fMRI. - Hongming Li; Theodore D. Satterthwaite; Yong Fan 001 (NeuroImage, 2017)

Brain age prediction based on resting-state functional connectivity patterns using convolutional neural networks. - Hongming Li; Theodore D. Satterthwaite; Yong Fan 001 (ISBI, 2018)

MIMoSA: An Approach to Automatically Segment T2 Hyperintense and T1 Hypointense Lesions in Multiple Sclerosis. - Alessandra M. Valcarcel; Kristin A. Linn; Fariha Khalid; Simon N. Vandekar; Shahamat Tauhid; Theodore D. Satterthwaite; John Muschelli; Rohit Bakshi; Russell T. Shinohara (BrainLes@MICCAI (1), 2018)

Sex differences in network controllability as a predictor of executive function in youth. - Eli J. Cornblath; Evelyn Tang; Graham L. Baum; Tyler M. Moore; David R. Roalf; Ruben C. Gur; Raquel E. Gur; Fabio Pasqualetti; Theodore D. Satterthwaite; Danielle S. Bassett (CoRR, 2018)

Finding the needle in high-dimensional haystack: A tutorial on canonical correlation analysis. - Hao-Ting Wang; Jonathan Smallwood; Janaina Mourão Miranda; Cedric Huchuan Xia; Theodore D. Satterthwaite; Danielle S. Bassett; Danilo Bzdok (CoRR, 2018)

On testing for spatial correspondence between maps of human brain structure and function. - Aaron Alexander-Bloch; Haochang Shou; Siyuan Liu; Theodore D. Satterthwaite; David C. Glahn; Russell T. Shinohara; Simon N. Vandekar; Armin Raznahan (NeuroImage, 2018)

The impact of in-scanner head motion on structural connectivity derived from diffusion MRI. - Graham L. Baum; David R. Roalf; Philip A. Cook; Rastko Ciric; Adon F. G. Rosen; Cedric Xia; Mark A. Elliott; Kosha Ruparel; Ragini Verma; Birkan Tunç; Ruben C. Gur; Raquel E. Gur; et al. (NeuroImage, 2018)

Brain state expression and transitions are related to complex executive cognition in normative neurodevelopment. - John D. Medaglia; Theodore D. Satterthwaite; Apoorva Kelkar; Rastko Ciric; Tyler M. Moore; Kosha Ruparel; Ruben C. Gur; Raquel E. Gur; Danielle S. Bassett (NeuroImage, 2018)

Brain state flexibility accompanies motor-skill acquisition. - Pranav G. Reddy; Marcelo Gomes Mattar; Andrew C. Murphy; Nicholas F. Wymbs; Scott T. Grafton; Theodore D. Satterthwaite; Danielle S. Bassett (NeuroImage, 2018)

Quantitative assessment of structural image quality. - Adon F. G. Rosen; David R. Roalf; Kosha Ruparel; Jason Blake; Kevin Seelaus; Lakshmi P. Villa; Rastko Ciric; Philip A. Cook; Christos Davatzikos; Mark A. Elliott; Angel Garcia de La Garza; Efstathios D. Gennatas; et al. (NeuroImage, 2018)

Sex differences in network controllability as a predictor of executive function in youth. - Eli J. Cornblath; Evelyn Tang; Graham L. Baum; Tyler M. Moore; Azeez Adebimpe; David R. Roalf; Ruben C. Gur; Raquel E. Gur; Fabio Pasqualetti; Theodore D. Satterthwaite; Danielle S. Bassett (NeuroImage, 2019)

System-level matching of structural and functional connectomes in the human brain. - Yusuf Osmanlioglu; Birkan Tunç; Drew Parker; Mark A. Elliott; Graham L. Baum; Rastko Ciric; Theodore D. Satterthwaite; Raquel E. Gur; Ruben C. Gur; Ragini Verma (NeuroImage, 2019)

Discovering Synchronized Subsets of Sequences: A Large Scale Solution. - Evangelos Sariyanidi; Casey J. Zampella; G. Keith Bartley; John D. Herrington; Theodore D. Satterthwaite; Robert T. Schultz; Birkan Tunç (CVPR, 2020)

Medical Image Harmonization Using Deep Learning Based Canonical Mapping: Toward Robust and Generalizable Learning in Imaging. - Vishnu M. Bashyam; Jimit Doshi; Güray Erus; Dhivya Srinivasan; Ahmed Abdulkadir; Mohamad Habes; Yong Fan 001; Colin L. Masters; Paul Maruff; Chuanjun Zhuo; Henry Völzke; Sterling C. Johnson; et al. (CoRR, 2020)

Harmonization of large MRI datasets for the analysis of brain imaging patterns throughout the lifespan. - Raymond Pomponio; Güray Erus; Mohamad Habes; Jimit Doshi; Dhivya Srinivasan; Elizabeth Mamourian; Vishnu Bashyam; Ilya M. Nasrallah; Theodore D. Satterthwaite; Yong Fan 001; Lenore J. Launer; Colin L. Masters; et al. (NeuroImage, 2020)

Finding the needle in a high-dimensional haystack: Canonical correlation analysis for neuroscientists. - Hao-Ting Wang; Jonathan Smallwood; Janaina Mourão Miranda; Cedric Huchuan Xia; Theodore D. Satterthwaite; Danielle S. Bassett; Danilo Bzdok (NeuroImage, 2020)

Intensity warping for multisite MRI harmonization. - Julia Wrobel; M. L. Martin; Rohit Bakshi; Peter A. Calabresi; M. Elliot; David R. Roalf; Ruben C. Gur; Raquel E. Gur; Roland G. Henry; Govind Nair; Jiwon Oh; Nico Papinutto; et al. (NeuroImage, 2020)

FlywheelTools: Data Curation and Manipulation on the Flywheel Platform. - Tinashe M. Tapera; Matthew Cieslak; Max Bertolero; Azeez Adebimpe; Geoffrey Karl Aguirre; Ellyn R. Butler; Philip A. Cook; Diego Davila; Mark A. Elliott; Sophia Linguiti; Kristin Murtha; William Tackett; et al. (Frontiers Neuroinformatics, 2021)

Hierarchical Extraction of Functional Connectivity Components in Human Brain Using Resting-State fMRI. - Dushyant Sahoo; Theodore D. Satterthwaite; Christos Davatzikos (IEEE Trans. Medical Imaging, 2021)

Multi-scale semi-supervised clustering of brain images: Deriving disease subtypes. - Junhao Wen 002; Erdem Varol; Aristeidis Sotiras; Zhijian Yang; Ganesh B. Chand; Güray Erus; Haochang Shou; Ahmed Abdulkadir; Gyujoon Hwang; Dominic B. Dwyer; Alessandro Pigoni; Paola Dazzan; et al. (Medical Image Anal., 2022)

Harmonizing functional connectivity reduces scanner effects in community detection. - Andrew A. Chen; Dhivya Srinivasan; Raymond Pomponio; Yong Fan 001; Ilya M. Nasrallah; Susan M. Resnick; Lori L. Beason-Held; Christos Davatzikos; Theodore D. Satterthwaite; Dani S. Bassett; Russell T. Shinohara; Haochang Shou (NeuroImage, 2022)

Curation of BIDS (CuBIDS): A workflow and software package for streamlining reproducible curation of large BIDS datasets. - Sydney Covitz; Tinashe M. Tapera; Azeez Adebimpe; Aaron Alexander-Bloch; Maxwell A. Bertolero; Eric Feczko; Alexandre R. Franco; Raquel E. Gur; Ruben C. Gur; Timothy Hendrickson; Audrey Houghton; Kahini Mehta; et al. (NeuroImage, 2022)

Retinal ganglion cell endowment is correlated with optic tract fiber cross section, not density. - Huseyin O. Taskin; Yuchuan Qiao; Valerie J. Sydnor; Matthew Cieslak; Edda B. Haggerty; Theodore D. Satterthwaite; Jessica I. W. Morgan; Yonggang Shi; Geoffrey Karl Aguirre (NeuroImage, 2022)

Spatially-enhanced clusterwise inference for testing and localizing intermodal correspondence. - Sara Weinstein; Simon N. Vandekar; Erica B. Baller; Danni Tu; Azeez Adebimpe; Tinashe M. Tapera; Ruben C. Gur; Raquel E. Gur; John A. Detre; Armin Raznahan; Aaron Alexander-Bloch; Theodore D. Satterthwaite; et al. (NeuroImage, 2022)

Computing personalized brain functional networks from fMRI using self-supervised deep learning. - Hongming Li; Dhivya Srinivasan; Chuanjun Zhuo; Zaixu Cui; Raquel E. Gur; Ruben C. Gur; Desmond J. Oathes; Christos Davatzikos; Theodore D. Satterthwaite; Yong Fan 001 (Medical Image Anal., 2023)

Multiscale functional connectivity patterns of the aging brain learned from harmonized rsfMRI data of the multi-cohort iSTAGING study. - Zhen Zhou; Hongming Li; Dhivya Srinivasan; Ahmed Abdulkadir; Ilya M. Nasrallah; Junhao Wen 002; Jimit Doshi; Güray Erus; Elizabeth Mamourian; R. Nick Bryan; David A. Wolk; Lori L. Beason-Held; et al. (NeuroImage, 2023)

ModelArray: An R package for statistical analysis of fixel-wise data. - Chenying Zhao; Tinashe M. Tapera; Joëlle Bagautdinova; Josiane Bourque; Sydney Covitz; Raquel E. Gur; Ruben C. Gur; Bart Larsen; Kahini Mehta; Steven L. Meisler; Kristin Murtha; John Muschelli; et al. (NeuroImage, 2023)

Image harmonization: A review of statistical and deep learning methods for removing batch effects and evaluation metrics for effective harmonization. - Fengling Hu; Andrew A. Chen; Hannah Horng; Vishnu Bashyam; Christos Davatzikos; Aaron Alexander-Bloch; Mingyao Li; Haochang Shou; Theodore D. Satterthwaite; Meichen Yu; Russell T. Shinohara (NeuroImage, 2023)

ALE meta-analyses of voxel-based morphometry studies: Parameter validation via large-scale simulations. - Lennart Frahm; Theodore D. Satterthwaite; Peter T. Fox; Robert Langner; Simon B. Eickhoff (NeuroImage, 2023)

Resting fMRI-guided TMS evokes subgenual anterior cingulate response in depression. - Romain J. Duprat; Kristin A. Linn; Theodore D. Satterthwaite; Yvette I. Sheline; Ximo Liang; Gabriela Bagdon; Matthew W. Flounders; Heather Robinson; Michael Platt; Joseph Kable; Hannah Long; Morgan Scully; et al. (NeuroImage, 2025)