Instantaneous characterization of time varying nonlinear systems (neurophysiological responses). - Don N. Krieger; Theodore W. Berger; Robert J. Sclabassi (IEEE Trans. Biomed. Eng., 1992)

A biologically based model of functional properties of the hippocampus. - Theodore W. Berger; Gilbert A. Chauvet; Robert J. Sclabassi (Neural Networks, 1994)

A hippocampal model implementation using VLSI table-look-up and model-based approaches. - Richard H. Tsai; Eric Y. Chou; Bing J. Sheu; Theodore W. Berger (ICNN, 1995)

VLSI Neural Network Implementation of a Hippocampal Model. - Bing J. Sheu; Theodore W. Berger; Tony H. Wu; Richard H. Tsai (ISCAS, 1995)

A Compact Neural Network Based CDMA Receiver for Multimedia Wireless Communication. - David C. Chen 001; Bing J. Sheu; Theodore W. Berger (ICCD, 1996)

VLSI design for real-time signal processing based on biologically realistic neural models. - Richard H. Tsai; Bing J. Sheu; Theodore W. Berger (ICNN, 1996)

Computing with dynamic synapses: a case study of speech recognition. - Jim-Shih Liaw; Theodore W. Berger (ICNN, 1997)

Decomposition of neural systems with nonlinear feedback using stimulus-response data. - Martin T. Chian; Vasilis Z. Marmarelis; Theodore W. Berger (Neurocomputing, 1999)

Consequence of morphological alterations on synaptic function. - Taraneh Ghaffari-Farazi; Jim-Shih Liaw; Theodore W. Berger (Neurocomputing, 1999)

Dynamic synapse: Harnessing the computing power of synaptic dynamics. - Jim-Shih Liaw; Theodore W. Berger (Neurocomputing, 1999)

A protocol-based simulation for linking computational and experimental studies. - Ying Shu; Xiaping Xie; Jim-Shih Liaw; Theodore W. Berger (Neurocomputing, 1999)

Modeling of nonlinear nonstationary dynamic systems with a novel class of artificial neural networks. - M. Iatrou; Theodore W. Berger; Vasilis Z. Marmarelis (IEEE Trans. Neural Networks, 1999)

Compact VLSI Neural Network Circuit with High-Capacity Dynamic Synapses. - Alex Yoondong Park; Jim-Shih Liaw; Theodore W. Berger; Bing J. Sheu (IJCNN (4), 2000)

Building Replacement Parts for the Brain: A New Era in Neural Prothetcis, SIGMOD Conference 1999, Keynote Speech, Video - Theodore W. Berger (ACM SIGMOD Digit. Symp. Collect., 2000)

A novel network for nonlinear modeling of neural systems with arbitrary point-process inputs. - Konstantinos Alataris; Theodore W. Berger; Vasilis Z. Marmarelis (Neural Networks, 2000)

Brain-implantable biomimetic electronics as the next era in neural prosthetics. - Theodore W. Berger; Michel Baudry; Roberta Diaz Brinton; Jim-Shih Liaw; Vasilis Z. Marmarelis; Alex Yoondong Park; Bing J. Sheu; Armand R. Tanguay (Proc. IEEE, 2001)

A new approach for isolated word recognition using dynamic synapse neural networks. - Alireza A. Dibazar; Hassan H. Narnarvar; Theodore W. Berger (IJCNN, 2003)

Using dynamic synapse based neural networks with wavelet preprocessing for speech applications. - Sageev T. George; Alireza A. Dibazar; Vishal Desai; Theodore W. Berger (IJCNN, 2003)

Trust region nonlinear optimization learning method for dynamic synapse neural networks. - Hassan H. Narnarvar; Theodore W. Berger (IJCNN, 2003)

Robust command recognition using kernel learning algorithms. - Hassan H. Narnarvar; Theodore W. Berger (IJCNN, 2003)

An efficient training algorithm for dynamic synapse neural networks using trust region methods. - Hassan H. Namarvar; Theodore W. Berger (Neural Networks, 2003)

Implantable biomimetic microelectronics for the replacement of hippocampal memory function lost due to damage or disease. - Theodore W. Berger (IJCNN, 2004)

Modeling nonlinear neural dynamics with Volterra-Poisson kernels. - Spiros H. Courellis; Ghassan I. Gholmieh; Vasilis Z. Marmarelis; Theodore W. Berger (IJCNN, 2004)

Speech recognition based on fundamental functional principles of the brain. - Alireza A. Dibazar; Dong Song; Walter M. Yamada; Theodore W. Berger (IJCNN, 2004)

Implantable biomimetic electronics as neural prostheses for lost cognitive function. - Theodore W. Berger; John J. Granacki; Vasilis Z. Marmarelis; Armand R. Tanguay Jr.; Sam A. Deadwyler; Greg A. Gerhardt (IJCNN, 2005)

Detecting CA1 short-term plasticity variations associated with changes in stimulus intensity and extracellular medium composition. - Ghassan I. Gholmieh; Spiros H. Courellis; Vasilis Z. Marmarelis; Theodore W. Berger (Neurocomputing, 2005)

EONS: An Online Synaptic Modeling Platform. - Jean-Marie C. Bouteiller; Yumei Qiu; Mohammed B. Ziane; Michel Baudry; Theodore W. Berger (EMBC, 2006)

Modeling Hippocampal Nonlinear Dynamic Transformations with Principal Dynamic Modes. - Spiros H. Courellis; Theodoros P. Zanos; Min-Chi Hsiao; Robert E. Hampson; Sam A. Deadwyler; Vasilis Z. Marmarelis; Theodore W. Berger (EMBC, 2006)

Pathological Voice Assessment. - Alireza A. Dibazar; Theodore W. Berger; Shrikanth S. Narayanan (EMBC, 2006)

Modeling the Nonlinear Dynamic Interactions of the Lateral and the Medial Perforant Path of the Hippocampal Dentate Gyrus. - Angelika Dimoka; Spiros H. Courellis; Vasilis Z. Marmarelis; Theodore W. Berger (EMBC, 2006)

VLSI Implementation of a Nonlinear Neuronal Model: A "Neural Prosthesis" to Restore Hippocampal Trisynaptic Dynamics. - Min-Chi Hsiao; Chiu-Hsien Chan; Vijay Srinivasan; Ashish Ahuja; Gopal Erinjippurath; Theodoros P. Zanos; Ghassan I. Gholmieh; Dong Song; Jack Wills; Jeff LaCoss; Spiros H. Courellis; Armand R. Tanguay; et al. (EMBC, 2006)

Nonlinear Dynamic Neural Network for Text-Independent Speaker Identification using Information Theoretic Learning Technology. - Bing Lu; Walter M. Yamada; Theodore W. Berger (EMBC, 2006)

Boolean Modeling of Neural Systems with Point-Process Inputs and Outputs. - Vasilis Z. Marmarelis; Theodoros P. Zanos; Spiros H. Courellis; Theodore W. Berger (EMBC, 2006)

Physiologically Plausible Stochastic Nonlinear Kernel Models of Spike Train to Spike Train Transformation. - Dong Song; Rosa H. M. Chan; Vasilis Z. Marmarelis; Robert E. Hampson; Sam A. Deadwyler; Theodore W. Berger (EMBC, 2006)

Interaction of Short-Term Neuronal Plasticity and Synaptic Plasticity Revealed by Nonlinear Systems Analysis in Dentate Granule Cells. - Xiaping Xie; Dong Song; Zhuo Wang; Vasilis Z. Marmarelis; Theodore W. Berger (EMBC, 2006)

A multi-input modeling approach to quantify hippocampal nonlinear dynamic transformations. - Theodoros P. Zanos; Spiros H. Courellis; Robert E. Hampson; Sam A. Deadwyler; Vasilis Z. Marmarelis; Theodore W. Berger (EMBC, 2006)

Hardware Implementation of Dynamic Synapse Neural Networks for Acoustic Sound Recognition. - Alireza A. Dibazar; Abhijith Bangalore; Hyung-Ook Park; Sageev T. George; Walter M. Yamada; Theodore W. Berger (IJCNN, 2006)

Nonlinear Queuing Model for Dynamic Synapse with Multiple Transmitter Pools. - Bing Lu; Walter M. Yamada; Theodore W. Berger (IJCNN, 2006)

The Application of Dynamic Synapse Neural Networks on Footstep and Vehicle Recognition. - Alireza A. Dibazar; Hyung-Ook Park; Theodore W. Berger (IJCNN, 2007)

Asymmetric Synaptic Plasticity Based on Arbitrary Pre- and Postsynaptic Timing Spikes Using Finite State Model. - Bing Lu; Walter M. Yamada; Theodore W. Berger (IJCNN, 2007)

Nonlinear Dynamic Modeling of Spike Train Transformations for Hippocampal-Cortical Prostheses. - Dong Song; Rosa H. M. Chan; Vasilis Z. Marmarelis; Robert E. Hampson; Sam A. Deadwyler; Theodore W. Berger (IEEE Trans. Biomed. Eng., 2007)

Neuronal Network Morphology and Electrophysiologyof Hippocampal Neurons Cultured on Surface-Treated Multielectrode Arrays. - Walid V. Soussou; Geoffrey J. Yoon; Roberta Diaz Brinton; Theodore W. Berger (IEEE Trans. Biomed. Eng., 2007)

Nonlinear Hebbian Learning for noise-independent vehicle sound recognition. - Bing Lu; Alireza A. Dibazar; Theodore W. Berger (IJCNN, 2008)

Implantable biomimetic electronics as neural prostheses for lost memory function. - Theodore W. Berger (IUI, 2008)

Modeling the Nonlinear Properties of the in vitro Hippocampal Perforant Path-Dentate System Using Multielectrode Array Technology. - Angelika Dimoka; Spiros H. Courellis; Ghassan I. Gholmieh; Vasilis Z. Marmarelis; Theodore W. Berger (IEEE Trans. Biomed. Eng., 2008)

Multi-Input, Multi-Output Nonlinear Dynamic Modeling to Identify Biologically-Based Transformations as the "Cognitive Processes" Represented by the Ensemble Coding of Neuron Populations. - Theodore W. Berger; Dong Song; Vasilis Z. Marmarelis (AAAI Fall Symposium: Biologically Inspired Cognitive Architectures, 2009)

Cadence analysis of temporal gait patterns for seismic discrimination between human and quadruped footsteps. - Hyung-Ook Park; Alireza A. Dibazar; Theodore W. Berger (ICASSP, 2009)

Parametric and non-parametric modeling of short-term synaptic plasticity. Part I: computational study. - Dong Song; Vasilis Z. Marmarelis; Theodore W. Berger (J. Comput. Neurosci., 2009)

Parametric and non-parametric modeling of short-term synaptic plasticity. Part II: Experimental study. - Dong Song; Zhuo Wang; Vasilis Z. Marmarelis; Theodore W. Berger (J. Comput. Neurosci., 2009)

Nonlinear modeling of neural population dynamics for hippocampal prostheses. - Dong Song; Rosa H. M. Chan; Vasilis Z. Marmarelis; Robert E. Hampson; Sam A. Deadwyler; Theodore W. Berger (Neural Networks, 2009)

Design of a helmet-mounted microphone array for sound localization. - Hyung-Ook Park; Alireza A. Dibazar; Theodore W. Berger (ICASSP, 2010)

The Application of Non-Homogenous HMM on the Detection of Security Fence Breaches. - Ali Yousefi; Alireza A. Dibazar; Theodore W. Berger (ICASSP, 2010)

Statistical spiking model for real world pattern recognition applications. - Alireza A. Dibazar; Sageev T. George; Theodore W. Berger (IJCNN, 2010)

Discrete Synapse Recurrent Neural Network for nonlinear system modeling and its application on seismic signal classification. - Hyung-Ook Park; Alireza A. Dibazar; Theodore W. Berger (IJCNN, 2010)

Signal Processing for Neural Spike Trains. - Theodore W. Berger; Zhe (Sage) Chen; Andrzej Cichocki; Karim G. Oweiss; Rodrigo Quian Quiroga; Nitish V. Thakor (Comput. Intell. Neurosci., 2010)

Noise-robust acoustic signature recognition using nonlinear Hebbian learning. - Bing Lu; Alireza A. Dibazar; Theodore W. Berger (Neural Networks, 2010)

The Neurobiological Basis of Cognition: Identification by Multi-Input, Multioutput Nonlinear Dynamic Modeling. - Theodore W. Berger; Dong Song; Rosa H. M. Chan; Vasilis Z. Marmarelis (Proc. IEEE, 2010)

Modeling of the nervous system: From molecular dynamics and synaptic modulation to neuron spiking activity. - Jean-Marie C. Bouteiller; Sushmita L. Allam; Eric Y. Hu; Renaud Greget; Nicolas Ambert; Anne Florence Keller; Fabien Pernot; Serge Bischoff; Michel Baudry; Theodore W. Berger (EMBC, 2011)

Tracking the changes of hippocampal population nonlinear dynamics in rats learning a memory-dependent task. - Rosa H. M. Chan; Dong Song; Anushka V. Goonawardena; Sarah Bough; John Sesay; Robert E. Hampson; Sam A. Deadwyler; Theodore W. Berger (EMBC, 2011)

Modeling neuron-glia interactions: From parametric model to neuromorphic hardware. - Viviane S. Ghaderi; Sushmita L. Allam; Nicolas Ambert; Jean-Marie C. Bouteiller; John Choma Jr.; Theodore W. Berger (EMBC, 2011)

Restorative encoding memory integrative neural device: "REMIND". - Robert E. Hampson; Vasilis Z. Marmarelis; Dae C. Shin; Greg A. Gerhardt; Dong Song; Rosa H. M. Chan; A. J. Sweatt; John J. Granacki; Theodore W. Berger; Sam A. Deadwyler (EMBC, 2011)

A hardware-based computational platform for Generalized Laguerre-Volterra MIMO model for neural activities. - Will X. Y. Li; Rosa H. M. Chan; Wei Zhang 044; Ray C. C. Cheung; Dong Song; Theodore W. Berger (EMBC, 2011)

A two-stage cascade nonlinear dynamical model of single neurons for the separation and quantification of pre- and post-synaptic mechanisms of synaptic transmission. - Ude Lu; Shane M. Roach; Dong Song; Theodore W. Berger (EMBC, 2011)

Dynamic nonlinear modeling of interactions between neuronal ensembles using principal dynamic modes. - Vasilis Z. Marmarelis; Dae C. Shin; Dong Song; Robert E. Hampson; Sam A. Deadwyler; Theodore W. Berger (EMBC, 2011)

Estimation and statistical validation of event-invariant nonlinear dynamic models of hippocampal CA3-CA1 population activities. - Dong Song; Rosa H. M. Chan; Vasilis Z. Marmarelis; Robert E. Hampson; Sam A. Deadwyler; Theodore W. Berger (EMBC, 2011)

FPGA Architecture of Generalized Laguerre-Volterra MIMO Model for Neural Population Spiking Activities. - Will X. Y. Li; Ray C. C. Cheung; Wei Zhang 044; Rosa H. M. Chan; Dong Song; Theodore W. Berger (FCCM, 2011)

FPGA Architecture of Generalized Laguerre-Volterra MIMO Model for Neural Population Activities. - Will X. Y. Li; Rosa H. M. Chan; Wei Zhang 044; C. W. Yu; Ray C. C. Cheung; Dong Song; Theodore W. Berger (FPL, 2011)

Discrete Synapse Recurrent Neural Network with time-varying delays for nonlinear system modeling and its application on seismic signal classification. - Hyung-Ook Park; Alireza A. Dibazar; Theodore W. Berger (IJCNN, 2011)

Supervised learning in a single layer Dynamic Synapses Neural Network. - Ali Yousefi; Alireza A. Dibazar; Theodore W. Berger (IJCNN, 2011)

High-Performance and Scalable System Architecture for the Real-Time Estimation of Generalized Laguerre-Volterra MIMO Model From Neural Population Spiking Activity. - Will X. Y. Li; Rosa H. M. Chan; Wei Zhang 044; Ray C. C. Cheung; Dong Song; Theodore W. Berger (IEEE J. Emerg. Sel. Topics Circuits Syst., 2011)

Integrated Multiscale Modeling of the Nervous System: Predicting Changes in Hippocampal Network Activity by a Positive AMPA Receptor Modulator. - Jean-Marie Bouteiller; Sushmita L. Allam; Eric Y. Hu; Renaud Greget; Nicolas Ambert; Anne Florence Keller; Serge Bischoff; Michel Baudry; Theodore W. Berger (IEEE Trans. Biomed. Eng., 2011)

Nonlinear Dynamic Modeling of Synaptically Driven Single Hippocampal Neuron Intracellular Activity. - Ude Lu; Dong Song; Theodore W. Berger (IEEE Trans. Biomed. Eng., 2011)

Influence of ionotropic receptor location on their dynamics at glutamatergic synapses. - Sushmita L. Allam; Jean-Marie C. Bouteiller; Eric Y. Hu; Renaud Greget; Nicolas Ambert; Serge Bischoff; Michel Baudry; Theodore W. Berger (EMBC, 2012)

Modeling of the nervous system: From modulation of glutamatergic and gabaergic molecular dynamics to neuron spiking activity. - Jean-Marie C. Bouteiller; Arnaud Legendre; Sushmita L. Allam; Nicolas Ambert; Eric Y. Hu; Renaud Greget; Anne Florence Keller; Fabien Pernot; Serge Bischoff; Michel Baudry; Theodore W. Berger (EMBC, 2012)

Analog low-power hardware implementation of a Laguerre-Volterra model of intracellular subthreshold neuronal activity. - Viviane S. Ghaderi; Shane M. Roach; Dong Song; Vasilis Z. Marmarelis; John Choma Jr.; Theodore W. Berger (EMBC, 2012)

Towards a large-scale biologically realistic model of the hippocampus. - Phillip J. Hendrickson; Gene J. Yu; Brian S. Robinson; Dong Song; Theodore W. Berger (EMBC, 2012)

Spatio-temporal inter-ictal activity recorded from human epileptic hippocampal slices. - Min-Chi Hsiao; Pen-Ning Yu; Dong Song; Charles Yu Liu; Christi N. Heck; David E. Millett; Theodore W. Berger (EMBC, 2012)

A dual mode FPGA design for the hippocampal prosthesis. - Will X. Y. Li; Rosa H. M. Chan; Dong Song; Theodore W. Berger; Ray C. C. Cheung (EMBC, 2012)

Nonlinear model for Dynamic Synapse Neural Network. - Hyung-Ook Park; Alireza A. Dibazar; Theodore W. Berger (EMBC, 2012)

An analysis of the expression locus of long-term potentiation in hippocampal CA1 neurons. - Shane M. Roach; Ude Lu; Dong Song; Theodore W. Berger (EMBC, 2012)

Implementation of activity-dependent synaptic plasticity rules for a large-scale biologically realistic model of the hippocampus. - Brian S. Robinson; Gene J. Yu; Phillip J. Hendrickson; Dong Song; Theodore W. Berger (EMBC, 2012)

Functional connectivity between Layer 2/3 and Layer 5 neurons in prefrontal cortex of nonhuman primates during a delayed match-to-sample task. - Dong Song; Ioan Opris; Rosa H. M. Chan; Vasilis Z. Marmarelis; Robert E. Hampson; Sam A. Deadwyler; Theodore W. Berger (EMBC, 2012)

Implementation of topographically constrained connectivity for a large-scale biologically realistic model of the hippocampus. - Gene J. Yu; Brian S. Robinson; Phillip J. Hendrickson; Dong Song; Theodore W. Berger (EMBC, 2012)

A Computational Model to Investigate Astrocytic Glutamate Uptake Influence on Synaptic Transmission and Neuronal Spiking. - Sushmita L. Allam; Viviane S. Ghaderi; Jean-Marie Bouteiller; Arnaud Legendre; Nicolas Ambert; Renaud Greget; Serge Bischoff; Michel Baudry; Theodore W. Berger (Frontiers Comput. Neurosci., 2012)

Columnar Processing in Primate pFC: Evidence for Executive Control Microcircuits. - Ioan Opris; Robert E. Hampson; Greg A. Gerhardt; Theodore W. Berger; Sam A. Deadwyler (J. Cogn. Neurosci., 2012)

Nonlinear Dynamic Modeling of Neuron Action Potential Threshold During Synaptically Driven Broadband Intracellular Activity. - Ude Lu; Shane M. Roach; Dong Song; Theodore W. Berger (IEEE Trans. Biomed. Eng., 2012)

Influence of ionotropic receptors localization on glutamatergic synaptic response to paired-pulse stimulation protocol. - Jean-Marie C. Bouteiller; Sushmita L. Allam; Nicolas Ambert; Renaud Greget; Eric Y. Hu; Serge Bischoff; Michel Baudry; Theodore W. Berger (EMBC, 2013)

Insights on synaptic paired-pulse response using parametric and non-parametric models. - Jean-Marie C. Bouteiller; Eric Y. Hu; Sushmita L. Allam; Viviane S. Ghaderi; Dong Song; Theodore W. Berger (EMBC, 2013)

A programmable analog subthreshold biomimetic model for bi-directional communication with the brain. - Viviane S. Ghaderi; Dong Song; Jean-Marie C. Bouteiller; John Choma Jr.; Theodore W. Berger (EMBC, 2013)

Conformal ceramic electrodes that record glutamate release and corresponding neural activity in primate prefrontal cortex. - Robert E. Hampson; Joshua L. Fuqua; Peter F. Huettl; Ioan Opris; Dong Song; Dae C. Shin; Vasilis Z. Marmarelis; Theodore W. Berger; Greg A. Gerhardt; Sam A. Deadwyler (EMBC, 2013)

The contribution of relative activation levels between populations of cells to network activity in a large-scale biologically realistic model of the hippocampus. - Phillip J. Hendrickson; Gene J. Yu; Brian S. Robinson; Dong Song; Theodore W. Berger (EMBC, 2013)

Laguerre-volterra identification of spike-timing-dependent plasticity from spiking activity: A simulation study. - Brian S. Robinson; Dong Song; Theodore W. Berger (EMBC, 2013)

The role of topography in the transformation of spatiotemporal patterns by a large-scale, biologically realistic model of the rat dentate gyrus. - Gene J. Yu; Phillip J. Hendrickson; Brian S. Robinson; Dong Song; Theodore W. Berger (EMBC, 2013)

A reconfigurable architecture for real-time prediction of neural activity. - Will X. Y. Li; Ray C. C. Cheung; Rosa H. M. Chan; Dong Song; Theodore W. Berger (ISCAS, 2013)

Nonlinear modeling of dynamic interactions within neuronal ensembles using Principal Dynamic Modes. - Vasilis Z. Marmarelis; Dae C. Shin; Dong Song; Robert E. Hampson; Sam A. Deadwyler; Theodore W. Berger (J. Comput. Neurosci., 2013)

Identification of sparse neural functional connectivity using penalized likelihood estimation and basis functions. - Dong Song; Haonan Wang; Catherine Y. Tu; Vasilis Z. Marmarelis; Robert E. Hampson; Sam A. Deadwyler; Theodore W. Berger (J. Comput. Neurosci., 2013)

Real-Time Prediction of Neuronal Population Spiking Activity Using FPGA. - Will X. Y. Li; Ray C. C. Cheung; Rosa H. M. Chan; Dong Song; Theodore W. Berger (IEEE Trans. Biomed. Circuits Syst., 2013)

A testbed to explore the optimal electrical stimulation parameters for suppressing inter-ictal spikes in human hippocampal slices. - Min-Chi Hsiao; Pen-Ning Yu; Dong Song; Charles Yu Liu; Christi N. Heck; David E. Millett; Theodore W. Berger (EMBC, 2014)

A comparison between direct and indirect measurements of neurotransmitter vesicle release dynamics: A computational study. - Eric Y. Hu; Jean-Marie C. Bouteiller; Mike Huang; Dong Song; Theodore W. Berger (EMBC, 2014)

Laguerre-volterra model and architecture for MIMO system identification and output prediction. - Will X. Y. Li; Yao Xin; Rosa H. M. Chan; Dong Song; Theodore W. Berger; Ray C. C. Cheung (EMBC, 2014)

Generalized volterra kernel model identification of spike-timing-dependent plasticity from simulated spiking activity. - Brian S. Robinson; Dong Song; Theodore W. Berger (EMBC, 2014)

Implementing spiking neuron model and spike-timing-dependent plasticity with generalized Laguerre-Volterra models. - Dong Song; Brian S. Robinson; John J. Granacki; Theodore W. Berger (EMBC, 2014)

Recording place cells from multiple sub-regions of the rat hippocampus with a customized micro-electrode array. - Huijing Xu; Min-Chi Hsiao; Dong Song; Theodore W. Berger (EMBC, 2014)

Unstable periodic orbits in human epileptic hippocampal slices. - Pen-Ning Yu; Min-Chi Hsiao; Dong Song; Charles Yu Liu; Christi N. Heck; David E. Millett; Theodore W. Berger (EMBC, 2014)

Implementation of the excitatory entorhinal-dentate-CA3 topography in a large-scale computational model of the rat hippocampus. - Gene J. Yu; Dong Song; Theodore W. Berger (EMBC, 2014)

Large scale parameter estimation for nonlinear dynamic systems: Application on spike-in, spike-out neural models. - Alireza A. Dibazar; A. H. Yousefi; Theodore W. Berger (IJCNN, 2014)

VLSI architecture of a high-performance neural spiking activity simulator based on generalized Volterra kernel. - Will X. Y. Li; Yao Xin; Dong Song; Theodore W. Berger; Ray C. C. Cheung (ISIC, 2014)

On parsing the neural code in the prefrontal cortex of primates using principal dynamic modes. - Vasilis Z. Marmarelis; Dae C. Shin; Dong Song; Robert E. Hampson; Sam A. Deadwyler; Theodore W. Berger (J. Comput. Neurosci., 2014)

An FPGA based scalable architecture of a stochastic state point process filter (SSPPF) to track the nonlinear dynamics underlying neural spiking. - Yao Xin; Will X. Y. Li; Ray C. C. Cheung; Rosa H. M. Chan; Hong Yan 001; Dong Song; Theodore W. Berger (Microelectron. J., 2014)

Synaptic dynamics: Linear model and adaptation algorithm. - Ali Yousefi; Alireza A. Dibazar; Theodore W. Berger (Neural Networks, 2014)

Tripartite Synapse (Neuron-Astrocyte Interactions), Conductance Models. - Theodore W. Berger (Encyclopedia of Computational Neuroscience, 2014)

Hippocampal Memory Prosthesis. - Dong Song; Theodore W. Berger (Encyclopedia of Computational Neuroscience, 2014)

A 3-D admittance-level computational model of a rat hippocampus for improving prosthetic design. - Andrew Gilbert; Kyle Loizos; Anil Kumar RamRakhyani; Phillip J. Hendrickson; Gianluca Lazzi; Theodore W. Berger (EMBC, 2015)

A million-plus neuron model of the hippocampal dentate gyrus: Dependency of spatio-temporal network dynamics on topography. - Phillip J. Hendrickson; Gene J. Yu; Dong Song; Theodore W. Berger (EMBC, 2015)

The volterra functional series is a viable alternative to kinetic models for synaptic modeling -calibration and benchmarking. - Eric Y. Hu; Jean-Marie C. Bouteiller; Dong Song; Theodore W. Berger (EMBC, 2015)

Estimation of a large-scale generalized Volterra model for neural ensembles with group lasso and local coordinate descent. - Brian S. Robinson; Dong Song; Theodore W. Berger (EMBC, 2015)

Sparse generalized volterra model of human hippocampal spike train transformation for memory prostheses. - Dong Song; Brian S. Robinson; Robert E. Hampson; Vasilis Z. Marmarelis; Sam A. Deadwyler; Theodore W. Berger (EMBC, 2015)

Design of a flexible parylene-based multi-electrode array for multi-region recording from the rat hippocampus. - Huijing Xu; Ahuva Weltman; Min-Chi Hsiao; Kee Scholten; Ellis Meng; Theodore W. Berger; Dong Song (EMBC, 2015)

Topography-dependent spatio-temporal correlations in the entorhinal-dentate-CA3 circuit in a large-scale computational model of the Rat Hippocampus. - Gene J. Yu; Phillip J. Hendrickson; Dong Song; Theodore W. Berger (EMBC, 2015)

Maximizing predictability of a bottom-up complex multi-scale model through systematic validation and multi-objective multi-level optimization. - Jean-Marie C. Bouteiller; Zhuobo Feng; Alexander Onopa; Mike Huang; Eric Y. Hu; Endre T. Somogyi; Michel Baudry; Serge Bischoff; Theodore W. Berger (NER, 2015)

Nonlinear dynamical modeling of human hippocampal CA3-CA1 functional connectivity for memory prostheses. - Dong Song; Robert E. Hampson; Brian S. Robinson; Ioan Opris; Vasilis Z. Marmarelis; Sam A. Deadwyler; Theodore W. Berger (NER, 2015)

Volterra representation enables modeling of complex synaptic nonlinear dynamics in large-scale simulations. - Eric Y. Hu; Jean-Marie C. Bouteiller; Dong Song; Michel Baudry; Theodore W. Berger (Frontiers Comput. Neurosci., 2015)

Model-based asessment of an in-vivo predictive relationship from CA1 to CA3 in the rodent hippocampus. - Roman A. Sandler; Dong Song; Robert E. Hampson; Sam A. Deadwyler; Theodore W. Berger; Vasilis Z. Marmarelis (J. Comput. Neurosci., 2015)

Nonlinear Cognitive Signal Processing in Ultralow-Power Programmable Analog Hardware. - Viviane S. Ghaderi; Dong Song; John Choma Jr.; Theodore W. Berger (IEEE Trans. Circuits Syst. II Express Briefs, 2015)

An Application Specific Instruction Set Processor (ASIP) for Adaptive Filters in Neural Prosthetics. - Yao Xin; Will X. Y. Li; Zhaorui Zhang; Ray C. C. Cheung; Dong Song; Theodore W. Berger (IEEE ACM Trans. Comput. Biol. Bioinform., 2015)

A large-scale detailed neuronal model of electrical stimulation of the dentate gyrus and perforant path as a platform for electrode design and optimization. - Clayton S. Bingham; Kyle Loizos; Gene J. Yu; Andrew Gilbert; Jean-Marie Bouteiller; Dong Song; Gianluca Lazzi; Theodore W. Berger (EMBC, 2016)

A bi-directional communication paradigm between parallel NEURON and an external non-neuron process. - Phillip J. Hendrickson; Clayton S. Bingham; Dong Song; Theodore W. Berger (EMBC, 2016)

Development of a detailed model of calcium dynamics at the postsynaptic spine of an excitatory synapse. - Eric Y. Hu; Jean-Marie C. Bouteiller; Dong Song; Theodore W. Berger (EMBC, 2016)

Monte Carlo validation of spike-timing-dependent plasticity identification from spiking activity. - Brian S. Robinson; Theodore W. Berger; Dong Song (EMBC, 2016)

Decoding memory features from hippocampal spiking activities using sparse classification models. - Dong Song; Robert E. Hampson; Brian S. Robinson; Vasilis Z. Marmarelis; Sam A. Deadwyler; Theodore W. Berger (EMBC, 2016)

A flexible parylene probe for in vivo recordings from multiple subregions of the rat hippocampus. - Huijing Xu; Ahuva Weltman; Min-Chi Hsiao; Kee Scholten; Ellis Meng; Theodore W. Berger; Dong Song (EMBC, 2016)

A sparse Laguerre-Volterra autoregressive model for seizure prediction in temporal lobe epilepsy. - Pen-Ning Yu; Shokofeh A. Naiini; Christi N. Heck; Charles Yu Liu; Dong Song; Theodore W. Berger (EMBC, 2016)

Place field detection using grid-based clustering in a large-scale computational model of the rat dentate gyrus. - Gene J. Yu; Dong Song; Theodore W. Berger (EMBC, 2016)

Mismatch and temperature compensation for subthreshold seismic sensor system. - Uldric A. Antao; John Choma Jr.; Alireza A. Dibazar; Theodore W. Berger (LASCAS, 2016)

An FPGA-Based High-Performance Neural Ensemble Spiking Activity Simulator Utilizing Generalized Volterra Kernel and Complexity Analysis. - Will X. Y. Li; Ray C. C. Cheung; Yao Xin; Dong Song; Theodore W. Berger (J. Circuits Syst. Comput., 2016)

Identification of Stable Spike-Timing-Dependent Plasticity from Spiking Activity with Generalized Multilinear Modeling. - Brian S. Robinson; Theodore W. Berger; Dong Song (Neural Comput., 2016)

A Million-Plus Neuron Model of the Hippocampal Dentate Gyrus: Critical Role for Topography in Determining Spatiotemporal Network Dynamics. - Phillip J. Hendrickson; Gene J. Yu; Dong Song; Theodore W. Berger (IEEE Trans. Biomed. Eng., 2016)

Multi-resolution multi-trial sparse classification model for decoding visual memories from hippocampal spikes in human. - Dong Song; Xiwei She; Robert E. Hampson; Sam A. Deadwyler; Theodore W. Berger (EMBC, 2017)

Chronic multi-region recording from the rat hippocampus in vivo with a flexible Parylene-based multi-electrode array. - Huijing Xu; Ahuva Weltman; Kee Scholten; Ellis Meng; Theodore W. Berger; Dong Song (EMBC, 2017)

A 9-nW on-chip constant subthreshold CMOS transconductance bias with fine-tuning. - Uldric A. Antao; John Choma Ming Hsieh; Theodore W. Berger (ISCAS, 2017)

Graph-Based Models of Cortical Axons for the Prediction of Neuronal Response to Extracellular Electrical Stimulation. - Clayton S. Bingham; Jean-Marie C. Bouteiller; Dong Song; Theodore W. Berger (EMBC, 2018)

Point Process Filtering Estimates of Branching Rate for Neural Dendritic Morphology Generation. - Zane Z. Chou; Gene J. Yu; Theodore W. Berger (EMBC, 2018)

A Closed-Loop Multi-Channel Asynchronous Neurostimulator to Mimic Neural Code for Cognitive Prosthesis. - Sahar Elyahoodayan; Theodore W. Berger; Dong Song (EMBC, 2018)

Modeling Nonlinear Synaptic Dynamics: A Laguerre-Volterra Network Framework for Improved Computational Efficiency in Large Scale Simulations. - Eric Y. Hu; Gene J. Yu; Dong Song; Jean-Marie C. Bouteiller; Theodore W. Berger (EMBC, 2018)

Cholinergic Modulation of CA1 Pyramidal Cells via M1 Muscarinic Receptor Activation: A Computational Study at Physiological and Supraphysiological Levels. - Adam Mergenthal; Jean-Marie C. Bouteiller; Theodore W. Berger (EMBC, 2018)

Application of Parylene-Based Flexible Multi-Electrode Array for Recording From Subcortical Brain Regions From Behaving Rats. - Huijing Xu; Ahuva W. Hirschberg; Kee Scholten; Ellis Meng; Theodore W. Berger; Dong Song (EMBC, 2018)

A Glutamatergic Spine Model to Enable Multi-Scale Modeling of Nonlinear Calcium Dynamics. - Eric Y. Hu; Adam Mergenthal; Clayton S. Bingham; Dong Song; Jean-Marie Bouteiller; Theodore W. Berger (Frontiers Comput. Neurosci., 2018)

Mechanism-Based and Input-Output Modeling of the Key Neuronal Connections and Signal Transformations in the CA3-CA1 Regions of the Hippocampus. - Kunling Geng; Dae C. Shin; Dong Song; Robert E. Hampson; Sam A. Deadwyler; Theodore W. Berger; Vasilis Z. Marmarelis (Neural Comput., 2018)

ASIC Implementation of a Nonlinear Dynamical Model for Hippocampal Prosthesis. - Zhitong Qiao; Yan Han; Xiaoxia Han; Han Xu; Will X. Y. Li; Dong Song; Theodore W. Berger; Ray C. C. Cheung (Neural Comput., 2018)

Designing Patient-Specific Optimal Neurostimulation Patterns for Seizure Suppression. - Roman A. Sandler; Kunling Geng; Dong Song; Robert E. Hampson; Mark R. Witcher; Sam A. Deadwyler; Theodore W. Berger; Vasilis Z. Marmarelis (Neural Comput., 2018)

Model-Based Analysis of Electrode Placement and Pulse Amplitude for Hippocampal Stimulation. - Clayton S. Bingham; Kyle Loizos; Gene J. Yu; Andrew Gilbert; Jean-Marie C. Bouteiller; Dong Song; Gianluca Lazzi; Theodore W. Berger (IEEE Trans. Biomed. Eng., 2018)

Pathogenic Processes Underlying Alzheimer's Disease: Modeling the Effects of Amyloid Beta on Synaptic Transmission. - Jean-Marie C. Bouteiller; Adam R. Mergenthal; Eric Y. Hu; Theodore W. Berger (EMBC, 2019)

Network Activity Due to Topographic Organization of Schaffer Collaterals in a Large-Scale Model of Rat CA1. - Gene J. Yu; Zhicheng Feng; Theodore W. Berger (EMBC, 2019)

Multi-Input, Multi-Output Neuronal Mode Network Approach to Modeling the Encoding Dynamics and Functional Connectivity of Neural Systems. - Kunling Geng; Dae C. Shin; Dong Song; Robert E. Hampson; Samuel A. Deadwyler; Theodore W. Berger; Vasilis Z. Marmarelis (Neural Comput., 2019)

Axonal Anatomy Optimizes Spatial Encoding in the Rat Entorhinal-Dentate System: A Computational Study. - Gene J. Yu; Jean-Marie C. Bouteiller; Dong Song; Theodore W. Berger (IEEE Trans. Biomed. Eng., 2019)

Validation of a Convolutional Neural Network Model for Spike Transformation Using a Generalized Linear Model. - Bryan J. Moore; Theodore W. Berger; Dong Song (EMBC, 2020)

Accelerating Estimation of a Multi-Input Multi-Output Model of the Hippocampus with a Parallel Computing Strategy. - Xiwei She; Brian S. Robinson; Theodore W. Berger; Dong Song (EMBC, 2020)

A Computational Model of Mitochondria Motility in Axons. - Jiaan Zhu; Jian Loong Lim Jethro; Bowen Li; Adam Mergenthal; Adnan A. Rayes; Hejun Tang; Theodore W. Berger; Jean-Marie C. Bouteiller (EMBC, 2020)

ROOTS: An Algorithm to Generate Biologically Realistic Cortical Axons and an Application to Electroceutical Modeling. - Clayton S. Bingham; Adam Mergenthal; Jean-Marie C. Bouteiller; Dong Song; Gianluca Lazzi; Theodore W. Berger (Frontiers Comput. Neurosci., 2020)

Admittance Method for Estimating Local Field Potentials Generated in a Multi-Scale Neuron Model of the Hippocampus. - Clayton S. Bingham; Javad Paknahad; Christopher B. C. Girard; Kyle Loizos; Jean-Marie C. Bouteiller; Dong Song; Gianluca Lazzi; Theodore W. Berger (Frontiers Comput. Neurosci., 2020)

Generation of Granule Cell Dendritic Morphologies by Estimating the Spatial Heterogeneity of Dendritic Branching. - Zane Z. Chou; Gene J. Yu; Theodore W. Berger (Frontiers Comput. Neurosci., 2020)

A Computational Model of the Cholinergic Modulation of CA1 Pyramidal Cell Activity. - Adam Mergenthal; Jean-Marie C. Bouteiller; Gene J. Yu; Theodore W. Berger (Frontiers Comput. Neurosci., 2020)

Topographic Organization of Correlation Along the Longitudinal and Transverse Axes in Rat Hippocampal CA3 Due to Excitatory Afferents. - Gene J. Yu; Jean-Marie C. Bouteiller; Theodore W. Berger (Frontiers Comput. Neurosci., 2020)

Bridging Hierarchies in Multi-Scale Models of Neural Systems: Look-Up Tables Enable Computationally Efficient Simulations of Non-linear Synaptic Dynamics. - Duy-Tan J. Pham; Gene J. Yu; Jean-Marie C. Bouteiller; Theodore W. Berger (Frontiers Comput. Neurosci., 2021)

A Double-Layer Multi-Resolution Classification Model for Decoding Spatiotemporal Patterns of Spikes With Small Sample Size. - Xiwei She; Theodore W. Berger; Dong Song (Neural Comput., 2022)

Developing a hippocampal neural prosthetic to facilitate human memory encoding and recall of stimulus features and categories. - Brent M. Roeder; Xiwei She; Alexander S. Dakos; Bryan Moore; Robert T. Wicks; Mark R. Witcher; Daniel E. Couture; Adrian W. Laxton; Heidi M. Munger Clary; Gautam Popli; Charles Liu; Brian Lee; et al. (Frontiers Comput. Neurosci., 2024)