Promoter Extraction from GenBank (PEG): automatic extraction of eukaryotic promoter sequences in large sets of genes. - Theresa Zhang; Michael Q. Zhang (Bioinform., 2001)

Enhanced homology searching through genome reading frame predetermination. - Jeffrey Yuan; Bruce Bush; Alex Elbrecht; Yuan Liu; Theresa Zhang; Wenqing Zhao; Richard Blevins (Bioinform., 2004)

DWE: Discriminating Word Enumerator. - Pavel Sumazin; Gengxin Chen; Naoya Hata; Andrew D. Smith; Theresa Zhang; Michael Q. Zhang (Bioinform., 2005)