Querying large read collections in main memory: a versatile data structure. - Nicolas Philippe; Mikaël Salson; Thierry Lecroq; Martine Léonard; Therese Commes; Eric Rivals (BMC Bioinform., 2011)

A Scalable Indexing Solution to Mine Huge Genomic Sequence Collections. - Eric Rivals; Nicolas Philippe; Mikaël Salson; Martine Léonard; Therese Commes; Thierry Lecroq (ERCIM News, 2012)

The Role of Machine Learning in Finding Chimeric RNAs. - Sacha Beaumeunier; Jerome Audoux; Anthony Boureux; Therese Commes; Nicolas Philippe; Ronnie Alves (DEXA Workshops, 2015)

A Module-Based Approach for Evaluating Differential Genome-Wide Expression Profiles. - Jose Flavio de S. Dias; Ronnie Alves; Therese Commes (BRACIS, 2016)

SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines. - Jerome Audoux; Mikaël Salson; Christophe F. Grosset; Sacha Beaumeunier; Jean-Marc Holder; Therese Commes; Nicolas Philippe (BMC Bioinform., 2017)