Using 3D Non Rigid FFD-Based Method to Register post mortem 3D Histological Data and in vivo MRI of a Baboon Brain. - Thierry Delzescaux; Julien Dauguet; Françoise Condé; Renaud Maroy; Vincent Frouin (MICCAI (2), 2003)

Robust Inter-slice Intensity Normalization Using Histogram Scale-Space Analysis. - Julien Dauguet; Jean-François Mangin; Thierry Delzescaux; Vincent Frouin (MICCAI (1), 2004)

3D Histological Reconstruction of Fiber Tracts and Direct Comparison with Diffusion Tensor MRI Tractography. - Julien Dauguet; Sharon Peled; Vladimir Berezovskii; Thierry Delzescaux; Simon K. Warfield; Richard T. Born; Carl-Fredrik Westin (MICCAI (1), 2006)

Fully Automated and Adaptive Detection of Amyloid Plaques in Stained Brain Sections of Alzheimer Transgenic Mice. - Abdelmonem Feki; Olivier Teboul; Albertine Dubois; Bruno Bozon; Alexis Faure; Philippe Hantraye; Marc Dhenain; Benoît Delatour; Thierry Delzescaux (MICCAI (2), 2007)

Comparison of fiber tracts derived from in-vivo DTI tractography with 3D histological neural tract tracer reconstruction on a macaque brain. - Julien Dauguet; Sharon Peled; Vladimir Berezovskii; Thierry Delzescaux; Simon K. Warfield; Richard T. Born; Carl-Fredrik Westin (NeuroImage, 2007)

Quantitative validation of voxel-wise statistical analyses of autoradiographic rat brain volumes: Application to unilateral visual stimulation. - Albertine Dubois; Anne-Sophie Hérard; Guillaume Flandin; Edouard Duchesnay; Laurent Besret; Vincent Frouin; Philippe Hantraye; Gilles Bonvento; Thierry Delzescaux (NeuroImage, 2008)

Locally Constrained Cubic B-Spline Deformations to Control Volume Variations. - Julien Dauguet; Anne-Sophie Hérard; Jérôme Declerck; Thierry Delzescaux (ISBI, 2009)

Segmentation of Anatomo-Functional 3D Post Mortem Data Using a MRI-Based 3D Digital Atlas: Transgenic Mouse Brains Study. - Jessica Lebenberg; Anne-Sophie Hérard; Albertine Dubois; Marc Dhenain; Philippe Hantraye; Vincent Frouin; Thierry Delzescaux (ISBI, 2009)

Detection by voxel-wise statistical analysis of significant changes in regional cerebral glucose uptake in an APP/PS1 transgenic mouse model of Alzheimer's disease. - Albertine Dubois; Anne-Sophie Hérard; Benoît Delatour; Philippe Hantraye; Gilles Bonvento; Marc Dhenain; Thierry Delzescaux (NeuroImage, 2010)

Validation of MRI-based 3D digital atlas registration with histological and autoradiographic volumes: An anatomofunctional transgenic mouse brain imaging study. - Jessica Lebenberg; Anne-Sophie Hérard; Albertine Dubois; Julien Dauguet; Vincent Frouin; Marc Dhenain; Philippe Hantraye; Thierry Delzescaux (NeuroImage, 2010)

A combination of atlas-based and voxel-wise approaches to analyze metabolic changes in autoradiographic data from Alzheimer's mice. - Jessica Lebenberg; Anne-Sophie Hérard; Albertine Dubois; Marc Dhenain; Philippe Hantraye; Thierry Delzescaux (NeuroImage, 2011)

Robust supervised segmentation of neuropathology whole-slide microscopy images. - Michel E. Vandenberghe; Yaël Balbastre; Nicolas Souedet; Anne-Sophie Hérard; Marc Dhenain; Frédérique Frouin; Thierry Delzescaux (EMBC, 2015)

Combined Laplacian-equivolumic model for studying cortical lamination with ultra high field MRI (7 T). - Yann Leprince; Fabrice Poupon; Thierry Delzescaux; Dominique Hasboun; Cyril Poupon; Denis Rivière (ISBI, 2015)

A Quantitative Approach to Characterize MR Contrasts with Histology. - Yaël Balbastre; Michel E. Vandenberghe; Anne-Sophie Hérard; Pauline Gipchtein; Caroline Jan; Anselme L. Perrier; Philippe Hantraye; Romina Aron-Badin; Jean-François Mangin; Thierry Delzescaux (Brainles@MICCAI, 2015)

Automated cell individualization and counting in cerebral microscopic images. - Zhenzhen You; Michel E. Vandenberghe; Yaël Balbastre; Nicolas Souedet; Philippe Hantraye; Caroline Jan; Anne-Sophie Hérard; Thierry Delzescaux (ICIP, 2016)

Virtual review of large scale image stack on 3D display. - Jonathan Sarton; Nicolas Courilleau; Anne-Sophie Hérard; Thierry Delzescaux; Yannick Rémion; Laurent Lucas (ICIP, 2017)

Primatologist: A modular segmentation pipeline for macaque brain morphometry. - Yaël Balbastre; Denis Rivière; Nicolas Souedet; Clara Fischer; Anne-Sophie Hérard; Susannah Williams; Michel E. Vandenberghe; Julien Flament; Romina Aron-Badin; Philippe Hantraye; Jean-François Mangin; Thierry Delzescaux (NeuroImage, 2017)

Cortical areas involved in behavioral expression of external pallidum dysfunctions: A PET imaging study in non-human primates. - Laurent Galineau; Aurélie Kas; Yulia Worbe; Marion Chaigneau; Anne-Sophie Hérard; Martine Guillermier; Thierry Delzescaux; Jean Féger; Philippe Hantraye; Léon Tremblay (NeuroImage, 2017)

Automated Detection Of Highly Aggregated Neurons In Microscopic Images Of Macaque Brain. - Zhenzhen You; Ming Jiang; Zhenghao Shi; Cheng Shi; Shuangli Du; Jimin Liang; Anne-Sophie Hérard; Caroline Jan; Nicolas Souedet; Thierry Delzescaux (ICIP, 2020)

A Multicenter Preclinical MRI Study: Definition of Rat Brain Relaxometry Reference Maps. - Tristan Deruelle; Frank Kober; Adriana Perles-Barbacaru; Thierry Delzescaux; Vincent Noblet; Emmanuel Luc Barbier; Michel Dojat (Frontiers Neuroinformatics, 2020)

Automated Atlas-based Segmentation of Single Coronal Mouse Brain Slices using Linear 2D-2D Registration. - Sébastien Piluso; Nicolas Souedet; Caroline Jan; Cédric Clouchoux; Thierry Delzescaux (EMBC, 2021)

Evaluation of Deep Learning Topcoders Method for Neuron Individualization in Histological Macaque Brain Section*. - Huaqian Wu; Nicolas Souedet; Zhenzhen You; Caroline Jan; Cédric Clouchoux; Thierry Delzescaux (EMBC, 2021)

Evaluation of Deep Learning Topcoders Method for Neuron Individualization in Histological Macaque Brain Section. - Huaqian Wu; Nicolas Souedet; Zhenzhen You; Caroline Jan; Cédric Clouchoux; Thierry Delzescaux (CoRR, 2021)

Adversarial Stain Transfer to Study the Effect of Color Variation on Cell Instance Segmentation. - Huaqian Wu; Nicolas Souedet; Camille Mabillon; Caroline Jan; Cédric Clouchoux; Thierry Delzescaux (MOVI@MICCAI, 2022)

A general deep learning framework for neuron instance segmentation based on Efficient UNet and morphological post-processing. - Huaqian Wu; Nicolas Souedet; Caroline Jan; Cédric Clouchoux; Thierry Delzescaux (Comput. Biol. Medicine, 2022)

End-to-end Neuron Instance Segmentation based on Weakly Supervised Efficient UNet and Morphological Post-processing. - Huaqian Wu; Nicolas Souedet; Caroline Jan; Cédric Clouchoux; Thierry Delzescaux (CoRR, 2022)

Macaque neuron instance segmentation only with point annotations based on multiscale fully convolutional regression neural network. - Zhenzhen You; Ming Jiang; Zhenghao Shi; Cheng Shi; Shuangli Du; Jimin Liang; Anne-Sophie Hérard; Caroline Jan; Nicolas Souedet; Thierry Delzescaux (Neural Comput. Appl., 2022)

PseudoNeuronGAN: Unpaired synthetic image to pseudo-neuron image translation for label-free neuron instance segmentation. - Zhenzhen You; Ming Jiang; Zhenghao Shi; Cheng Shi; Shuangli Du; Minghua Zhao; Anne-Sophie Hérard; Nicolas Souedet; Thierry Delzescaux (Neurocomputing, 2025)