An Object-Oriented Approach to Model Scenes of Buildings. - Thierry Matthey; Hanspeter Bieri (Computer Graphics International, 1998)

Evaluation of MPI's One-Sided Communication Mechanism for Short-Range Molecular Dynamics on the Origin2000. - Thierry Matthey; Jan P. Hansen (PARA, 2000)

ProtoMol: A Molecular Dynamics Framework with Incremental Parallelization. - Thierry Matthey; Jesús A. Izaguirre (PP, 2001)

PROTOMOL: A Molecular Dynamics Research Framework for Algorithmic Development. - Thierry Matthey; Alice Ko; Jesús A. Izaguirre (International Conference on Computational Science, 2003)

Performance of a parallel split operator method for the time dependent Schrodinger equation. - Thierry Matthey; Tor Sørevik (PARCO, 2003)

A Parallel Split Operator Method for the Time Dependent Schrödinger Equation. - Jan P. Hansen; Thierry Matthey; Tor Sørevik (PVM/MPI, 2003)

ProtoMol, an object-oriented framework for prototyping novel algorithms for molecular dynamics. - Thierry Matthey; Trevor M. Cickovski; Scott S. Hampton; Alice Ko; Qun Ma; Matthew Nyerges; Troy Raeder; Thomas Slabach; Jesús A. Izaguirre (ACM Trans. Math. Softw., 2004)

MDSIMAID: Automatic parameter optimization in fast electrostatic algorithms. - Michael S. Crocker; Scott S. Hampton; Thierry Matthey; Jesús A. Izaguirre (J. Comput. Chem., 2005)

Parallel multigrid summation for the N-body problem. - Jesús A. Izaguirre; Scott S. Hampton; Thierry Matthey (J. Parallel Distributed Comput., 2005)