Network Tomography for Trafficking Simulation and Analysis in Fluorescence Microscopy Imaging. - Thierry Pécot; Jérôme Boulanger; Charles Kervrann; Patrick Bouthemy (ISBI, 2007)

Network Tomography-Based Tracking for Intracellular Traffic Analysis in Fluorescence Microscopy Imaging. - Thierry Pécot; Charles Kervrann; Patrick Bouthemy (BIOSIGNALS (1), 2008)

Minimal paths and probabilistic models for origin-destination traffic estimation in live cell imaging. - Thierry Pécot; Charles Kervrann; Patrick Bouthemy (ISBI, 2008)

Patch-Based Markov Models for Event Detection in Fluorescence Bioimaging. - Thierry Pécot; Charles Kervrann; Sabine Bardin; Bruno Goud; Jean Salamero (MICCAI (2), 2008)

Evaluation of Image Sequences Additive Decomposition Algorithms for Membrane Analysis in Fluorescence Video-Microscopy. - Anatole Chessel; Thierry Pécot; Sabine Bardin; Charles Kervrann; Jean Salamero (ISBI, 2009)

Conditional Random Fields for Object and Background Estimation in Fluorescence Video-Microscopy. - Thierry Pécot; Anatole Chessel; Sabine Bardin; Jean Salamero; Patrick Bouthemy; Charles Kervrann (ISBI, 2009)

Modélisation et estimation du trafic intracellulaire par tomographie de réseaux et microscopie de fluorescence. (Intracellular traffic modeling and estimation using network tomography and fluorescence microscopy). - Thierry Pécot (2010)

Identifying Nuclear Phenotypes Using Semi-supervised Metric Learning. - Shantanu Singh; Firdaus Janoos; Thierry Pécot; Enrico Caserta; Gustavo Leone; Jens Rittscher; Raghu Machiraju (IPMI, 2011)

Non-parametric Population Analysis of Cellular Phenotypes. - Shantanu Singh; Firdaus Janoos; Thierry Pécot; Enrico Caserta; Kun Huang 001; Jens Rittscher; Gustavo Leone; Raghu Machiraju (MICCAI (2), 2011)

Multiscale NeighborhoodWise Decision Fusion for Redundancy Detection in Image Pairs. - Charles Kervrann; Jérôme Boulanger; Thierry Pécot; Patrick Pérez; Jean Salamero (Multiscale Model. Simul., 2011)

Non parametric cell nuclei segmentation based on a tracking over depth from 3D fluorescence confocal images. - Thierry Pécot; Shantanu Singh; Enrico Caserta; Kun Huang 001; Raghu Machiraju; Gustavo Leone (ISBI, 2012)

A signal processing approach for enriched region detection in RNA polymerase II ChIP-seq data. - Zhi Han; Lu Tian; Thierry Pécot; Tim Hui-Ming Huang; Raghu Machiraju; Kun Huang 001 (BMC Bioinform., 2012)

Robust detection and visualization of cytoskeletal structures in fibrillar scaffolds from 3-dimensional confocal image. - Do Young Park; Desiree Jones; Nicanor I. Moldovan; Raghu Machiraju; Thierry Pécot (BioVis, 2013)

Research and applications: Identifying survival associated morphological features of triple negative breast cancer using multiple datasets. - Chao Wang 081; Thierry Pécot; Debra L. Zynger; Raghu Machiraju; Charles L. Shapiro; Kun Huang 001 (J. Am. Medical Informatics Assoc., 2013)

Estimation of the flow of particles within a partition of the image domain in fluorescence video-microscopy. - Thierry Pécot; Jérôme Boulanger; Charles Kervrann; Patrick Bouthemy; Jean Salamero (ISBI, 2014)

Background Fluorescence Estimation and Vesicle Segmentation in Live Cell Imaging With Conditional Random Fields. - Thierry Pécot; Patrick Bouthemy; Jérôme Boulanger; Anatole Chessel; Sabine Bardin; Jean Salamero; Charles Kervrann (IEEE Trans. Image Process., 2015)

Counting-Based Particle Flux Estimation for Traffic Analysis in Live Cell Imaging. - Thierry Pécot; Charles Kervrann; Jean Salamero; Jérôme Boulanger (IEEE J. Sel. Top. Signal Process., 2016)

Capturing variations in nuclear phenotypes. - Sundaresan Raman; Shantanu Singh; Thierry Pécot; Enrico Caserta; Kun Huang 001; Jens Rittscher; Gustavo Leone; Raghu Machiraju (J. Comput. Sci., 2019)

A deep learning segmentation strategy that minimizes the amount of manually annotated images. - Thierry Pécot; Alexander V. Alekseyenko; Kristin Wallace (F1000Research, 2021)

Deep learning tools and modeling to estimate the temporal expression of cell cycle proteins from 2D still images. - Thierry Pécot; Maria C. Cuitiño; Roger H. Johnson; Cynthia Timmers; Gustavo Leone (PLoS Comput. Biol., 2022)