Alterations of the interactome of Bcl-2 proteins in breast cancer at the transcriptional, mutational and structural level. - Simon Mathis Kønig; Vendela Rissler; Thilde Terkelsen; Matteo Lambrughi; Elena Papaleo (PLoS Comput. Biol., 2019)

CAncer bioMarker Prediction Pipeline (CAMPP) - A standardized framework for the analysis of quantitative biological data. - Thilde Terkelsen; Anders Krogh; Elena Papaleo (PLoS Comput. Biol., 2020)

MutateX: an automated pipeline for in silico saturation mutagenesis of protein structures and structural ensembles. - Matteo Tiberti; Thilde Terkelsen; Kristine Degn; Ludovica Beltrame; Tycho Canter Cremers; Isabelle da Piedade; Miriam Di Marco; Emiliano Maiani; Elena Papaleo (Briefings Bioinform., 2022)