JDet: interactive calculation and visualization of function-related conservation patterns in multiple sequence alignments and structures. - Thilo Muth; Juan A. García-Martín; Antonio Rausell; David de Juan; Alfonso Valencia; Florencio Pazos (Bioinform., 2012)

Evaluating de novo sequencing in proteomics: already an accurate alternative to database-driven peptide identification? - Thilo Muth; Bernhard Y. Renard (Briefings Bioinform., 2018)

An Environment for Sustainable Research Software in Germany and Beyond: Current State, Open Challenges, and Call for Action. - Hartwig Anzt; Felix Bach; Stephan Druskat; Frank Löffler 001; Axel Loewe; Bernhard Y. Renard; Gunnar Seemann; Alexander Struck; Elke Achhammer; Piush Aggarwal; Franziska Appel; Michael Bader; et al. (CoRR, 2020)

An environment for sustainable research software in Germany and beyond: current state, open challenges, and call for action. - Hartwig Anzt; Felix Bach; Stephan Druskat; Frank Löffler 001; Axel Loewe; Bernhard Y. Renard; Gunnar Seemann; Alexander Struck; Elke Achhammer; Piush Aggarwal; Franziska Appel; Michael Bader; et al. (F1000Research, 2020)

Ad hoc learning of peptide fragmentation from mass spectra enables an interpretable detection of phosphorylated and cross-linked peptides. - Tom Altenburg; Sven H. Giese; Shengbo Wang; Thilo Muth; Bernhard Y. Renard (Nat. Mach. Intell., 2022)

Setting up the bioinformatics environment for employing meta-omics techniques in microbiome research and pathogen diagnostics - Thilo Muth (2022)

The BAM Data Store Piloting an OpenBIS-Based Research Data Infrastructure in Materials Science and Engineering. - Rukeia El-Athman; Jörg Rädler; Oliver Löhmann; Angela Ariza; Thilo Muth (CoRDI, 2023)

Comprehensive evaluation of peptide de novo sequencing tools for monoclonal antibody assembly. - Denis Beslic; Georg Tscheuschner; Bernhard Y. Renard; Michael G. Weller; Thilo Muth (Briefings Bioinform., 2023)

PepGM: a probabilistic graphical model for taxonomic inference of viral proteome samples with associated confidence scores. - Tanja Holstein; Franziska Kistner; Lennart Martens; Thilo Muth (Bioinform., 2023)

The Intersection Between Semantic Web and Materials Science. - Andre Valdestilhas; Bernd Bayerlein; Benjamí Moreno Torres; Ghezal Ahmad Jan Zia; Thilo Muth (Adv. Intell. Syst., 2023)

The importance of graph databases and graph learning for clinical applications. - Daniel Walke; Daniel Micheel; Kay Schallert; Thilo Muth; David Broneske; Gunter Saake; Robert Heyer (Database J. Biol. Databases Curation, 2024)