Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis. - Thomas Andrew Geddes; Taiyun Kim; Lihao Nan; James G. Burchfield; Jean Yee Hwa Yang; Dacheng Tao; Pengyi Yang (BMC Bioinform., 2019)

CiteFuse enables multi-modal analysis of CITE-seq data. - Hani Jieun Kim; Yingxin Lin; Thomas Andrew Geddes; Jean Yee Hwa Yang; Pengyi Yang (Bioinform., 2020)

Ensemble deep learning in bioinformatics. - Yue Cao; Thomas Andrew Geddes; Jean Yee Hwa Yang; Pengyi Yang (Nat. Mach. Intell., 2020)