Oscillating networks: modeling the pyloric circuit of the stomatogastric ganglion. - L. F. Abbott; Scott L. Hooper; Thomas B. Kepler; Eve Marder (IJCNN, 1990)

Order Reduction for Dynamical Systems Describing the Behavior of Complex Neurons. - Thomas B. Kepler; L. F. Abbott; Eve Marder (NIPS, 1990)

Reduction of conductance-based neuron models. - Thomas B. Kepler; L. F. Abbott; Eve Marder (Biol. Cybern., 1992)

Spike initiation and propagation on axons with slow inward currents. - Thomas B. Kepler; Eve Marder (Biol. Cybern., 1993)

A Model of Large-Scale proteome Evolution. - Ricard V. Solé; Romualdo Pastor-Satorras; Eric Smith; Thomas B. Kepler (Adv. Complex Syst., 2002)

SpA: web-accessible spectratype analysis: data management, statistical analysis and visualization. - Min He; John K. Tomfohr; Blythe H. Devlin; Marcella Sarzotti; M. Louise Markert; Thomas B. Kepler (Bioinform., 2005)

Statistical analysis of antigen receptor spectratype data. - Thomas B. Kepler; Min He; John K. Tomfohr; Blythe H. Devlin; Marcella Sarzotti; M. Louise Markert (Bioinform., 2005)

Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach. - Jun Lu; John K. Tomfohr; Thomas B. Kepler (BMC Bioinform., 2005)

Pathway level analysis of gene expression using singular value decomposition. - John K. Tomfohr; Jun Lu; Thomas B. Kepler (BMC Bioinform., 2005)

SpA: Web-accessible Spectratype Analysis: Application to Investigate the Development of TCR Diversity in a Patient with Complete DiGeorge Syndrome. - Min He; Blythe H. Devlin; Mary Markert; Marcella Sarzotti; Thomas B. Kepler (BIOCOMP, 2006)

HLA and HIV Infection Progression: Application of the Minimum Description Length Principle to Statistical Genetics. - Peter T. Hraber; Bette T. Korber; Steven Wolinsky; Henry A. Erlich; Elizabeth A. Trachtenberg; Thomas B. Kepler (ISBMDA, 2006)

SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations. - Joseph M. Volpe; Lindsay G. Cowell; Thomas B. Kepler (Bioinform., 2006)

Improving peptide-MHC class I binding prediction for unbalanced datasets. - Ana Paula Sales; Georgia D. Tomaras; Thomas B. Kepler (BMC Bioinform., 2008)

Flow: Statistics, visualization and informatics for flow cytometry. - Jacob Frelinger; Thomas B. Kepler; Cliburn Chan (Source Code Biol. Medicine, 2008)

The Multiscale Systems Immunology project: software for cell-based immunological simulation. - Faheem Mitha; Timothy A. Lucas; Feng Feng; Thomas B. Kepler; Cliburn Chan (Source Code Biol. Medicine, 2008)

The Dynamics of T-Cell Receptor Repertoire Diversity Following Thymus Transplantation for DiGeorge Anomaly. - Stanca M. Ciupe; Blythe H. Devlin; M. Louise Markert; Thomas B. Kepler (PLoS Comput. Biol., 2009)

SoDA2: a Hidden Markov Model approach for identification of immunoglobulin rearrangements. - Supriya Munshaw; Thomas B. Kepler (Bioinform., 2010)

A Bayesian approach for estimating calibration curves and unknown concentrations in immunoassays. - Feng Feng; Ana Paula Sales; Thomas B. Kepler (Bioinform., 2011)

Mixtures of Gaussian wells: Theory, computation, and application. - Ioanna Manolopoulou; Thomas B. Kepler; Daniel M. Merl (Comput. Stat. Data Anal., 2012)