A context-based approach to identify the most likely mapping for RNA-seq experiments. - Thomas Bonfert; Gergely Csaba; Ralf Zimmer; Caroline C. Friedel (BMC Bioinform., 2012)

ContextMap 2: fast and accurate context-based RNA-seq mapping. - Thomas Bonfert; Evelyn Kirner; Gergely Csaba; Ralf Zimmer; Caroline C. Friedel (BMC Bioinform., 2015)