CSMAGIC improves program generation with interactive COBOL. - Thomas C. Bishop; Edward J. Grace (Data Base, 1980)

VDNA: The virtual DNA plug-in for VMD. - Thomas C. Bishop (Bioinform., 2009)

ICM Web: the interactive chromatin modeling web server. - Richard C. Stolz; Thomas C. Bishop (Nucleic Acids Res., 2010)

Running many molecular dynamics simulations on many supercomputers. - Rajib Mukherjee; Abhinav Thota; Hideki Fujioka; Thomas C. Bishop; Shantenu Jha (XSEDE, 2012)

The anatomy of successful ECSS projects: lessons of supporting high-throughput high-performance ensembles on XSEDE. - Melissa Romanus; Pradeep Kumar Mantha; Matt McKenzie; Thomas C. Bishop; Emilio Gallicchio; André Merzky; Yaakoub El Khamra; Shantenu Jha (XSEDE, 2012)

Scalable online comparative genomics of mononucleosomes: a BigJob. - Jack A. Smith; Yaakoub El Khamra; Melissa Romanus; Thomas C. Bishop; Pradeep Kumar Mantha; Shantenu Jha (XSEDE, 2013)

TMB Library of Nucleosome Simulations. - Ran Sun; Zilong Li; Thomas C. Bishop (J. Chem. Inf. Model., 2019)