Reconnaissance-Attack Parsing. - Michael B. Kac; Thomas C. Rindflesch; Karen L. Ryan (COLING, 1986)

Coordination in reconnaissance-attack parsing. - Michael B. Kac; Thomas C. Rindflesch (COLING, 1988)

Query expansion using the UMLS Metathesaurus. - Alan R. Aronson; Thomas C. Rindflesch (AMIA, 1997)

Automatic semantic interpretation of anatomic spatial relationships in clinical text. - Carol A. Bean; Thomas C. Rindflesch; Charles Sneiderman (AMIA, 1998)

Evaluating lexical variant generation to improve information retrieval. - Guy Divita; Allen C. Browne; Thomas C. Rindflesch (AMIA, 1998)

Identification of anatomical terminology in medical text. - Charles Sneiderman; Thomas C. Rindflesch; Carol A. Bean (AMIA, 1998)

From Bibliography to Test Collection: Enhancing Topical Relevance Assessment for Bibliographic Information Retrieval System Evaluation. - Carol A. Bean; C. R. Selden; Thomas C. Rindflesch; Alan R. Aronson (AMIA, 1999)

Mining molecular binding terminology from biomedical text. - Thomas C. Rindflesch; Lawrence Hunter; Alan R. Aronson (AMIA, 1999)

Hierarchical Concept Indexing of Full-Text Documents in the Unified Medical Language System® Information Sources Map. - Lawrence W. Wright; Holly K. Grossetta Nardini; Alan R. Aronson; Thomas C. Rindflesch (J. Am. Soc. Inf. Sci., 1999)

The NLM Indexing Initiative. - Alan R. Aronson; Olivier Bodenreider; Florence Chang; Susanne M. Humphrey; James G. Mork; Stuart J. Nelson; Thomas C. Rindflesch; W. John Wilbur (AMIA, 2000)

Argument identification for arterial branching predications asserted in cardiac catheterization reports. - Thomas C. Rindflesch; Carol A. Bean; Charles Sneiderman (AMIA, 2000)

Extracting Molecular Binding Relationships from Biomedical Text. - Thomas C. Rindflesch; Jayant V. Rajan; Lawrence Hunter (ANLP, 2000)

Unsupervised, corpus-based method for extending a biomedical terminology. - Olivier Bodenreider; Thomas C. Rindflesch; Anita Burgun (ACL Workshop on Natural Language Processing in the Biomedical Domain, 2002)

NLP-based information extraction for managing the molecular biology literature. - Bisharah Libbus; Thomas C. Rindflesch (AMIA, 2002)

Discovering protein similarity using natural language processing. - Indra Neil Sarkar; Thomas C. Rindflesch (AMIA, 2002)

Exploring text mining from MEDLINE. - Padmini Srinivasan; Thomas C. Rindflesch (AMIA, 2002)

Finding UMLS Metathesaurus concepts in MEDLINE. - Suresh Srinivasan; Thomas C. Rindflesch; William T. Hole; Alan R. Aronson; James G. Mork (AMIA, 2002)

Assessing the consistency of a biomedical terminology through lexical knowledge. - Olivier Bodenreider; Anita Burgun; Thomas C. Rindflesch (Int. J. Medical Informatics, 2002)

Integrating a Hypernymic Proposition Interpreter into a Semantic Processor for Biomedical Texts. - Marcelo Fiszman; Thomas C. Rindflesch; Halil Kilicoglu (AMIA, 2003)

Interpreting Hypernymic Propositions in an Online Medical Encyclopedia. - Marcelo Fiszman; Thomas C. Rindflesch; Halil Kilicoglu (AMIA, 2003)

Towards (Semi-)automatic Generation of Bio-medical ontologies. - Vipul Kashyap; Cartic Ramakrishnan; Thomas C. Rindflesch (AMIA, 2003)

Semantic Relations Asserting the Etiology of Genetic Diseases. - Thomas C. Rindflesch; Bisharah Libbus; Dimitar Hristovski; Alan R. Aronson; Halil Kilicoglu (AMIA, 2003)

The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. - Thomas C. Rindflesch; Marcelo Fiszman (J. Biomed. Informatics, 2003)

Identifying Respiratory Findings in Emergency Department Reports for Biosurveillance using MetaMap. - Wendy W. Chapman; Marcelo Fiszman; John N. Dowling; Brian E. Chapman; Thomas C. Rindflesch (MedInfo, 2004)

Summarization of an Online Medical Encyclopedia. - Marcelo Fiszman; Thomas C. Rindflesch; Halil Kilicoglu (MedInfo, 2004)

Using Symbolic Knowledge in the UMLS to Disambiguate Words in Small Datasets with a Naïve Bayes Classifier. - Gondy Leroy; Thomas C. Rindflesch (MedInfo, 2004)

MedPost: a part-of-speech tagger for bioMedical text. - Lawrence H. Smith; Thomas C. Rindflesch; W. John Wilbur (Bioinform., 2004)

Determining Prominent Subdomains in Medicine. - Powell J. Bernhardt; Susanne M. Humphrey; Thomas C. Rindflesch (AMIA, 2005)

Medical Facts to Support Inferencing in Natural Language Processing. - Thomas C. Rindflesch; Serguei Pakhomov; Marcelo Fiszman; Halil Kilicoglu; Vincent R. Sánchez (AMIA, 2005)

Semantic characteristics of MEDLINE citations useful for therapeutic decision-making. - Charles Sneiderman; Dina Demner-Fushman; Marcelo Fiszman; Thomas C. Rindflesch (AMIA, 2005)

MedTag: A Collection of Biomedical Annotations. - Lawrence H. Smith; Lorraine K. Tanabe; Thomas C. Rindflesch; W. John Wilbur (LBLODMBS@IDMB, 2005)

Effects of information and machine learning algorithms on word sense disambiguation with small datasets. - Gondy Leroy; Thomas C. Rindflesch (Int. J. Medical Informatics, 2005)

Summarizing Drug Information in Medline Citations. - Marcelo Fiszman; Thomas C. Rindflesch; Halil Kilicoglu (AMIA, 2006)

Exploiting Semantic Relations for Literature-Based Discovery. - Dimitar Hristovski; Carol Friedman; Thomas C. Rindflesch; Borut Peterlin (AMIA, 2006)

Semantic Processing to Enhance Retrieval of Diagnosis Citations from Medline. - Charles Sneiderman; Dina Demner-Fushman; Marcelo Fiszman; Graciela Rosemblat; François-Michel Lang; Daphne Norwood; Thomas C. Rindflesch (AMIA, 2006)

Argument-predicate distance as a filter for enhancing precision in extracting predications on the genetic etiology of disease. - Marco Masseroli; Halil Kilicoglu; François-Michel Lang; Thomas C. Rindflesch (BMC Bioinform., 2006)

Semantic representation of consumer questions and physician answers. - Laura A. Slaughter; Dagobert Soergel; Thomas C. Rindflesch (Int. J. Medical Informatics, 2006)

Word sense disambiguation by selecting the best semantic type based on Journal Descriptor Indexing: Preliminary experiment. - Susanne M. Humphrey; Willie J. Rogers; Halil Kilicoglu; Dina Demner-Fushman; Thomas C. Rindflesch (J. Assoc. Inf. Sci. Technol., 2006)

The importance of the lexicon in tagging biological text. - Lawrence H. Smith; Thomas C. Rindflesch; W. John Wilbur (Nat. Lang. Eng., 2006)

Using the Literature-Based Discovery Paradigm to Investigate Drug Mechanisms. - Caroline B. Ahlers; Dimitar Hristovski; Halil Kilicoglu; Thomas C. Rindflesch (AMIA, 2007)

Identifying Risk Factors for Metabolic Syndrome in Biomedical Text. - Marcelo Fiszman; Graciela Rosemblat; Caroline B. Ahlers; Thomas C. Rindflesch (AMIA, 2007)

Leveraging Semantic Knowledge in IRB Databases to Improve Translation Science. - John F. Hurdle; Jeffery R. Botkin; Thomas C. Rindflesch (AMIA, 2007)

Interpreting comparative constructions in biomedical text. - Marcelo Fiszman; Dina Demner-Fushman; François-Michel Lang; Philip Goetz; Thomas C. Rindflesch (BioNLP@ACL, 2007)

Extracting Semantic Predications from Medline Citations for Pharmacogenomics. - Caroline B. Ahlers; Marcelo Fiszman; Dina Demner-Fushman; François-Michel Lang; Thomas C. Rindflesch (Pacific Symposium on Biocomputing, 2007)

Multiple Approaches to Fine-Grained Indexing of the Biomedical Literature. - Aurélie Névéol; Sonya E. Shooshan; Susanne M. Humphrey; Thomas C. Rindflesch; Alan R. Aronson (Pacific Symposium on Biocomputing, 2007)

Research Paper: Knowledge-based Methods to Help Clinicians Find Answers in MEDLINE. - Charles Sneiderman; Dina Demner-Fushman; Marcelo Fiszman; Nicholas C. Ide; Thomas C. Rindflesch (J. Am. Medical Informatics Assoc., 2007)

Semantic Processing to Support Clinical Guideline Development. - Marcelo Fiszman; Eduardo Ortiz; Bruce E. Bray; Thomas C. Rindflesch (AMIA, 2008)

Toward Automatic Recognition of High Quality Clinical Evidence. - Halil Kilicoglu; Dina Demner-Fushman; Thomas C. Rindflesch; Nancy L. Wilczynski; R. Brian Haynes (AMIA, 2008)

The Impact of Directionality in Predications on Text Mining. - Gondy Leroy; Marcelo Fiszman; Thomas C. Rindflesch (HICSS, 2008)

Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation. - Dimitar Hristovski; Andrej Kastrin; Borut Peterlin; Thomas C. Rindflesch (BioLINK@ISMB/ECCB, 2008)

Predication-based Semantic Indexing: Permutations as a Means to Encode Predications in Semantic Space. - Trevor Cohen; Roger W. Schvaneveldt; Thomas C. Rindflesch (AMIA, 2009)

Semantic Relations for Interpreting DNA Microarray Data. - Dimitar Hristovski; Andrej Kastrin; Borut Peterlin; Thomas C. Rindflesch (AMIA, 2009)

Viewpoint Paper: Towards Automatic Recognition of Scientifically Rigorous Clinical Research Evidence. - Halil Kilicoglu; Dina Demner-Fushman; Thomas C. Rindflesch; Nancy L. Wilczynski; R. Brian Haynes (J. Am. Medical Informatics Assoc., 2009)

Automatic summarization of MEDLINE citations for evidence-based medical treatment: A topic-oriented evaluation. - Marcelo Fiszman; Dina Demner-Fushman; Halil Kilicoglu; Thomas C. Rindflesch (J. Biomed. Informatics, 2009)

Logical Leaps and Quantum Connectives: Forging Paths through Predication Space. - Trevor Cohen; Dominic Widdows; Roger W. Schvaneveldt; Thomas C. Rindflesch (AAAI Fall Symposium: Quantum Informatics for Cognitive, Social, and Semantic Processes, 2010)

Arguments of Nominals in Semantic Interpretation of Biomedical Text. - Halil Kilicoglu; Marcelo Fiszman; Graciela Rosemblat; Sean Marimpietri; Thomas C. Rindflesch (BioNLP@ACL, 2010)

Combining Relevance Assignment with Quality of the Evidence to Support Guideline Development. - Marcelo Fiszman; Bruce E. Bray; Dongwook Shin; Halil Kilicoglu; Glen C. Bennett; Olivier Bodenreider; Thomas C. Rindflesch (MedInfo, 2010)

Adapting semantic natural language processing technology to address information overload in influenza epidemic management. - Alla Keselman; Graciela Rosemblat; Halil Kilicoglu; Marcelo Fiszman; Honglan Jin; Dongwook Shin; Thomas C. Rindflesch (J. Assoc. Inf. Sci. Technol., 2010)

Finding Schizophrenia's Prozac Emergent Relational Similarity in Predication Space. - Trevor Cohen; Dominic Widdows; Roger W. Schvaneveldt; Thomas C. Rindflesch (QI, 2011)

Constructing a semantic predication gold standard from the biomedical literature. - Halil Kilicoglu; Graciela Rosemblat; Marcelo Fiszman; Thomas C. Rindflesch (BMC Bioinform., 2011)

Semantic MEDLINE: An advanced information management application for biomedicine. - Thomas C. Rindflesch; Halil Kilicoglu; Marcelo Fiszman; Graciela Rosemblat; Dongwook Shin (Inf. Serv. Use, 2011)

Degree centrality for semantic abstraction summarization of therapeutic studies. - Han Zhang; Marcelo Fiszman; Dongwook Shin; Christopher M. Miller; Graciela Rosemblat; Thomas C. Rindflesch (J. Biomed. Informatics, 2011)

Using Literature-based Discovery to Explain Drug Adverse Effects. - Dimitar Hristovski; Anita Burgun; Paul Avillach; Thomas C. Rindflesch (AMIA, 2012)

Using SemRep to Label Semantic Relations Extracted from Clinical Text. - Ying Liu 042; Robert Bill; Marcelo Fiszman; Thomas C. Rindflesch; Ted Pedersen; Genevieve B. Melton; Serguei V. S. Pakhomov (AMIA, 2012)

Synonym, Topic Model and Predicate-Based Query Expansion for Retrieving Clinical Documents. - Qing T. Zeng; Doug Redd; Thomas C. Rindflesch; Jonathan R. Nebeker (AMIA, 2012)

Discovery at a distance: Farther journeys in predication space. - Trevor Cohen; Dominic Widdows; Roger W. Schvaneveldt; Thomas C. Rindflesch (BIBM Workshops, 2012)

Discovery by scent: Discovery browsing system based on the Information Foraging Theory. - J. Caleb Goodwin; Trevor Cohen; Thomas C. Rindflesch (BIBM Workshops, 2012)

Many Paths Lead to Discovery: Analogical Retrieval of Cancer Therapies. - Trevor Cohen; Dominic Widdows; Lance De Vine; Roger W. Schvaneveldt; Thomas C. Rindflesch (QI, 2012)

An Ensemble Approach for Expanding Queries. - Duy Duc An Bui; Doug Redd; Thomas C. Rindflesch; Qing Zeng-Treitler (TREC, 2012)

SemMedDB: a PubMed-scale repository of biomedical semantic predications. - Halil Kilicoglu; Dongwook Shin; Marcelo Fiszman; Graciela Rosemblat; Thomas C. Rindflesch (Bioinform., 2012)

Discovering discovery patterns with predication-based Semantic Indexing. - Trevor Cohen; Dominic Widdows; Roger W. Schvaneveldt; Peter Davies 002; Thomas C. Rindflesch (J. Biomed. Informatics, 2012)

Semantic MEDLINE for Discovery Browsing: Using Semantic Predications and the Literature-Based Discovery Paradigm to Elucidate a Mechanism for the Obesity Paradox. - Michael J. Cairelli; Christopher M. Miller; Marcelo Fiszman; Terri Elizabeth Workman; Thomas C. Rindflesch (AMIA, 2013)

Semantic Processing to Identify Adverse Drug Event Information from Black Box Warnings. - Adam Culbertson; Marcelo Fiszman; Dongwook Shin; Thomas C. Rindflesch (AMIA, 2013)

Preliminary Evaluation of a Literature-based Discovery Method for Explaining Drug Adverse Effects. - Dimitar Hristovski; Anita Burgun-Parenthoine; Paul Avillach; Thomas C. Rindflesch (AMIA, 2013)

A Literature-Based Assessment of Concept Pairs as a Measure of Semantic Relatedness. - Terri Elizabeth Workman; Graciela Rosemblat; Marcelo Fiszman; Thomas C. Rindflesch (AMIA, 2013)

Improve Retrieval Performance on Clinical Notes: A Comparison of Four Methods. - Doug Redd; Thomas C. Rindflesch; Jonathan R. Nebeker; Qing Zeng-Treitler (HICSS, 2013)

Clustering cliques for graph-based summarization of the biomedical research literature. - Han Zhang; Marcelo Fiszman; Dongwook Shin; Bartlomiej Wilkowski; Thomas C. Rindflesch (BMC Bioinform., 2013)

Extending SemRep to the public health domain. - Graciela Rosemblat; Melissa P. Resnick; Ione Auston; Dongwook Shin; Charles Sneiderman; Marcelo Fiszman; Thomas C. Rindflesch (J. Assoc. Inf. Sci. Technol., 2013)

A graph-based recovery and decomposition of Swanson's hypothesis using semantic predications. - Delroy Cameron; Olivier Bodenreider; Hima Yalamanchili; Tu Danh; Sreeram Vallabhaneni; Krishnaprasad Thirunarayan; Amit P. Sheth; Thomas C. Rindflesch (J. Biomed. Informatics, 2013)

Natural language processing: State of the art and prospects for significant progress, a workshop sponsored by the National Library of Medicine. - Carol Friedman; Thomas C. Rindflesch; Milton Corn (J. Biomed. Informatics, 2013)

A methodology for extending domain coverage in SemRep. - Graciela Rosemblat; Dongwook Shin; Halil Kilicoglu; Charles Sneiderman; Thomas C. Rindflesch (J. Biomed. Informatics, 2013)

Link Prediction on the Semantic MEDLINE Network - An Approach to Literature-Based Discovery. - Andrej Kastrin; Thomas C. Rindflesch; Dimitar Hristovski (Discovery Science, 2014)

Link Prediction in a MeSH Co-occurrence Network: Preliminary Results. - Andrej Kastrin; Thomas C. Rindflesch; Dimitar Hristovski (MIE, 2014)

Expansion-by-Analogy: A Vector Symbolic Approach to Semantic Search. - Trevor Cohen; Dominic Widdows; Thomas C. Rindflesch (QI, 2014)

Smart and Connected Health [Guest editors' introduction]. - Gondy Leroy; Hsinchun Chen; Thomas C. Rindflesch (IEEE Intell. Syst., 2014)

Framing serendipitous information-seeking behavior for facilitating literature-based discovery: A proposed model. - Terri Elizabeth Workman; Marcelo Fiszman; Thomas C. Rindflesch; Diane Nahl (J. Assoc. Inf. Sci. Technol., 2014)

Identifying plausible adverse drug reactions using knowledge extracted from the literature. - Ning Shang; Hua Xu 001; Thomas C. Rindflesch; Trevor Cohen (J. Biomed. Informatics, 2014)

Using semantic predications to uncover drug-drug interactions in clinical data. - Rui Zhang 028; Michael J. Cairelli; Marcelo Fiszman; Graciela Rosemblat; Halil Kilicoglu; Thomas C. Rindflesch; Serguei V. S. Pakhomov; Genevieve B. Melton (J. Biomed. Informatics, 2014)

Augmenting Microarray Data with Literature-Based Knowledge to Enhance Gene Regulatory Network Inference. - Guocai Chen; Michael J. Cairelli; Halil Kilicoglu; Dongwook Shin; Thomas C. Rindflesch (PLoS Comput. Biol., 2014)

Semantics-Based Cross-domain Collaboration Recommendation in the Life Sciences: Preliminary Results. - Dimitar Hristovski; Andrej Kastrin; Thomas C. Rindflesch (ASONAM, 2015)

Constructing a Graph Database for Semantic Literature-Based Discovery. - Dimitar Hristovski; Andrej Kastrin; Dejan Dinevski; Thomas C. Rindflesch (MedInfo, 2015)

Exploiting Semantic Predications in a Graph Database. - Andrej Kastrin; Thomas C. Rindflesch; Dejan Dinevski; Dimitar Hristovski (MIE, 2015)

Networks of neuroinjury semantic predications to identify biomarkers for mild traumatic brain injury. - Michael J. Cairelli; Marcelo Fiszman; Han Zhang; Thomas C. Rindflesch (J. Biomed. Semant., 2015)

Biomedical question answering using semantic relations. - Dimitar Hristovski; Dejan Dinevski; Andrej Kastrin; Thomas C. Rindflesch (BMC Bioinform., 2015)

Context-driven automatic subgraph creation for literature-based discovery. - Delroy Cameron; Ramakanth Kavuluru; Thomas C. Rindflesch; Amit P. Sheth; Krishnaprasad Thirunarayan; Olivier Bodenreider (J. Biomed. Informatics, 2015)

Implementing Semantics-Based Cross-domain Collaboration Recommendation in Biomedicine with a Graph Database. - Dimitar Hristovski; Andrej Kastrin; Thomas C. Rindflesch (AMIA, 2016)

Differentiating Sense through Semantic Interaction Data. - Terri Elizabeth Workman; Charlene R. Weir; Thomas C. Rindflesch (AMIA, 2016)

Evolution of MEDLINE bibliographic database: Preliminary results. - Andrej Kastrin; Thomas C. Rindflesch; Dimitar Hristovski (ASONAM, 2016)

Sortal anaphora resolution to enhance relation extraction from biomedical literature. - Halil Kilicoglu; Graciela Rosemblat; Marcelo Fiszman; Thomas C. Rindflesch (BMC Bioinform., 2016)

Spark, an application based on Serendipitous Knowledge Discovery. - Terri Elizabeth Workman; Marcelo Fiszman; Michael J. Cairelli; Diane Nahl; Thomas C. Rindflesch (J. Biomed. Informatics, 2016)

Using Literature-Based Discovery to Explain Adverse Drug Effects. - Dimitar Hristovski; Andrej Kastrin; Dejan Dinevski; Anita Burgun; Lovro Ziberna; Thomas C. Rindflesch (J. Medical Syst., 2016)

Evolution of Research Topics in MEDLINE. - Andrej Kastrin; Thomas C. Rindflesch; Dimitar Hristovski (AMIA, 2017)

Leveraging syntax to better capture the semantics of elliptical coordinated compound noun phrases. - Catherine Blake; Thomas C. Rindflesch (J. Biomed. Informatics, 2017)

Investigating the role of interleukin-1 beta and glutamate in inflammatory bowel disease and epilepsy using discovery browsing. - Thomas C. Rindflesch; Catherine Blake; Michael J. Cairelli; Marcelo Fiszman; Caroline J. Zeiss; Halil Kilicoglu (J. Biomed. Semant., 2018)