Efficient Diagnosis of Multiple Disorders Based on a Symptom Clustering Approach. - Thomas D. Wu (AAAI, 1990)

Probabilistic evaluation of candidate sets for multidisorder diagnosis. - Thomas D. Wu (UAI, 1990)

Domain Structure and the Complexity of Diagnostic Problem Solving. - Thomas D. Wu (AAAI, 1991)

Identification of Protein Motifs Using Conserved Amino Acid Properties and Partitioning Techniques. - Thomas D. Wu; Douglas L. Brutlag (ISMB, 1995)

Discovering Empirically Conserved Amino Acid Substitution Groups in Databases of Protein Families. - Thomas D. Wu; Douglas L. Brutlag (ISMB, 1996)

A Segment-Based Dynamic Programming Algorithm for Predicting Gene Structure. - Thomas D. Wu (J. Comput. Biol., 1996)

Enumerating and Ranking Discrete Motifs. - Craig G. Nevill-Manning; Komal S. Sethi; Thomas D. Wu; Douglas L. Brutlag (ISMB, 1997)

The Secure Remote Password Protocol. - Thomas D. Wu (NDSS, 1998)

Regression Analysis of Multiple Protein Structures. - Thomas D. Wu; Scott C. Schmidler; Trevor Hastie; Douglas L. Brutlag (J. Comput. Biol., 1998)

Experimenting with Shared Generation of RSA Keys. - Michael Malkin; Thomas D. Wu; Dan Boneh (NDSS, 1999)

A Real-World Analysis of Kerberos Password Security. - Thomas D. Wu (NDSS, 1999)

Building Intrusion-Tolerant Applications. - Thomas D. Wu; Michael Malkin; Dan Boneh (USENIX Security Symposium, 1999)

Minimal-Risk Scoring Matrices for Sequence Analysis. - Thomas D. Wu; Craig G. Nevill-Manning; Douglas L. Brutlag (J. Comput. Biol., 1999)

Fast probabilistic analysis of sequence function using scoring matrices. - Thomas D. Wu; Craig G. Nevill-Manning; Douglas L. Brutlag (Bioinform., 2000)

Large-scale analysis of gene expression profiles. - Thomas D. Wu (Briefings Bioinform., 2002)

GEPIS - quantitative gene expression profiling in normal and cancer tissues. - Yan Zhang; David A. Eberhard; Gretchen D. Frantz; Patrick Dowd; Thomas D. Wu; Yan Zhou; Colin K. Watanabe; Shiuh-Ming Luoh; Paul Polakis; Kenneth J. Hillan; William I. Wood; Zemin Zhang (Bioinform., 2004)

GMAP: a genomic mapping and alignment program for mRNA and EST sequence. - Thomas D. Wu; Colin K. Watanabe (Bioinform., 2005)

Fast and SNP-tolerant detection of complex variants and splicing in short reads. - Thomas D. Wu; Serban Nacu (Bioinform., 2010)

Compression of structured high-throughput sequencing data - Fabien Campagne; Kevin C. Dorff; Nyasha Chambwe; James T. Robinson; Jill P. Mesirov; Thomas D. Wu (CoRR, 2012)

Probabilistic Evaluation of Candidates and Symptom Clustering for Multidisorder Diagnosis - Thomas D. Wu (CoRR, 2013)

GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality. - Thomas D. Wu; Jens Reeder; Michael Lawrence; Gabe Becker; Matthew J. Brauer (Statistical Genomics, 2016)

Bitpacking techniques for indexing genomes: I. Hash tables. - Thomas D. Wu (Algorithms Mol. Biol., 2016)

Bitpacking techniques for indexing genomes: II. Enhanced suffix arrays. - Thomas D. Wu (Algorithms Mol. Biol., 2016)