EEG-fMRI fusion of non-triggered data using Kalman filtering. - Thomas Deneux; Olivier D. Faugeras (ISBI, 2006)

Cerebral blood flow recorded at high sensitivity in two dimensions using high resolution optical imaging. - Ivo Vanzetta; Thomas Deneux; Guillaume S. Masson; Olivier D. Faugeras (ISBI, 2006)

Using nonlinear models in fMRI data analysis: Model selection and activation detection. - Thomas Deneux; Olivier D. Faugeras (NeuroImage, 2006)

Hemodynamic Models: Investigation and Application to Brain Imaging Analysis. (Modèles Hémodynamiques: Investigation et Application à l'Analyse en Imagerie Cérébrale). - Thomas Deneux (2006)

Sift-based sequence registration and flow-based cortical vessel segmentation applied to high resolution optical imaging data. - Mickaël Péchaud; Ivo Vanzetta; Thomas Deneux; Renaud Keriven (ISBI, 2008)

EEG-fMRI Fusion of Paradigm-Free Activity Using Kalman Filtering. - Thomas Deneux; Olivier D. Faugeras (Neural Comput., 2010)

A New Variational Method for Erythrocyte Velocity Estimation in Wide-Field Imaging In Vivo. - Thomas Deneux; Olivier D. Faugeras; Sylvain Takerkart; Guillaume S. Masson; Ivo Vanzetta (IEEE Trans. Medical Imaging, 2011)

A processing work-flow for measuring erythrocytes velocity in extended vascular networks from wide field high-resolution optical imaging data. - Thomas Deneux; Sylvain Takerkart; Amiram Grinvald; Guillaume S. Masson; Ivo Vanzetta (NeuroImage, 2012)

Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. - Philipp Berens; Jeremy Freeman; Thomas Deneux; Nicolay Chenkov; Thomas McColgan; Artur Speiser; Jakob H. Macke; Srinivas C. Turaga; Patrick J. Mineault; Peter Rupprecht; Stephan Gerhard; Rainer W. Friedrich; et al. (PLoS Comput. Biol., 2018)

"AlphAI": Teaching AI Algorithms to K12 by Training Learning Robots and Visualizing How It Works. - Marie Absalon; Thomas Deneux (AAAI, 2025)