The Iccare web server: an attempt to merge sequence and mapping information for plant and animal species. - Cédric Muller; Mathieu Denis; Laurent Gentzbittel; Thomas Faraut (Nucleic Acids Res., 2004)

The cyclic genetic code as a constraint satisfaction problem. - Georges Weil; Kamel Heus; Thomas Faraut; Jacques Demongeot (Theor. Comput. Sci., 2004)

Alvira: comparative genomics of viral strains. - François Enault; Romain Fremez; Eric Baranowski; Thomas Faraut (Bioinform., 2007)

A comparative genome approach to marker ordering. - Thomas Faraut; Simon de Givry; Patrick Chabrier; Thomas Derrien; Francis Galibert; Christophe Hitte; Thomas Schiex (Bioinform., 2007)

Phylogenetic exploration of bacterial genomic rearrangements. - Romain Fremez; Thomas Faraut; Gwennaele Fichant; Jérôme Gouzy; Yves Quentin (Bioinform., 2007)

Narcisse: a mirror view of conserved syntenies. - Emmanuel Courcelle; Yoann Beausse; Sébastien Letort; Olivier Stahl; Romain Fremez; Catherine Ngom-Bru; Jérôme Gouzy; Thomas Faraut (Nucleic Acids Res., 2008)

Statistical confidence measures for genome maps: application to the validation of genome assemblies. - Bertrand Servin; Simon de Givry; Thomas Faraut (Bioinform., 2010)

Detecting long tandem duplications in genomic sequences. - Eric Audemard; Thomas Schiex; Thomas Faraut (BMC Bioinform., 2012)

Enhancer/gene relationships: Need for more reliable genome-wide reference sets. - Tristan Hoellinger; Camille Mestre; Hugues Aschard; Wilfried Le Goff; Sylvain Foissac; Thomas Faraut; Sarah Djebali (Frontiers Bioinform., 2023)